학술논문

Prostate cancer reactivates developmental epigenomic programs during metastatic progression
Document Type
article
Source
Nature Genetics. 52(8)
Subject
Agricultural
Veterinary and Food Sciences
Biological Sciences
Bioinformatics and Computational Biology
Genetics
Agricultural Biotechnology
Aging
Human Genome
Urologic Diseases
Cancer
Prostate Cancer
2.1 Biological and endogenous factors
Aetiology
Cell Line
Cell Line
Tumor
Disease Progression
Epigenomics
Gene Expression Regulation
Neoplastic
HEK293 Cells
Hepatocyte Nuclear Factor 3-alpha
Humans
Male
Prostate
Prostatic Neoplasms
Receptors
Androgen
Regulatory Sequences
Nucleic Acid
Medical and Health Sciences
Developmental Biology
Agricultural biotechnology
Bioinformatics and computational biology
Language
Abstract
Epigenetic processes govern prostate cancer (PCa) biology, as evidenced by the dependency of PCa cells on the androgen receptor (AR), a prostate master transcription factor. We generated 268 epigenomic datasets spanning two state transitions-from normal prostate epithelium to localized PCa to metastases-in specimens derived from human tissue. We discovered that reprogrammed AR sites in metastatic PCa are not created de novo; rather, they are prepopulated by the transcription factors FOXA1 and HOXB13 in normal prostate epithelium. Reprogrammed regulatory elements commissioned in metastatic disease hijack latent developmental programs, accessing sites that are implicated in prostate organogenesis. Analysis of reactivated regulatory elements enabled the identification and functional validation of previously unknown metastasis-specific enhancers at HOXB13, FOXA1 and NKX3-1. Finally, we observed that prostate lineage-specific regulatory elements were strongly associated with PCa risk heritability and somatic mutation density. Examining prostate biology through an epigenomic lens is fundamental for understanding the mechanisms underlying tumor progression.