학술논문

Single-nuclei characterization of pervasive transcriptional signatures across organs in response to COVID-19
Document Type
article
Source
Subject
Biological Sciences
Bioinformatics and Computational Biology
Coronaviruses
Infectious Diseases
Genetics
Lung
Emerging Infectious Diseases
Biotechnology
2.1 Biological and endogenous factors
Good Health and Well Being
Humans
COVID-19
SARS-CoV-2
Endothelial Cells
RNA
Viral
COVID
cell atlas
transcriptomics
RNA-seq
single-cell
transcriptional regulation
Human
COVID Tissue Atlas Consortium
epidemiology
genetics
genomics
global health
human
Biochemistry and Cell Biology
Biological sciences
Biomedical and clinical sciences
Health sciences
Language
Abstract
BackgroundInfection by coronavirus SARS-CoV2 is a severe and often deadly disease that has implications for the respiratory system and multiple organs across the human body. While the effects in the lung have been extensively studied, less is known about the impact COVID-19 has across other organs.MethodsHere, we contribute a single-nuclei RNA-sequencing atlas comprising six human organs across 20 autopsies where we analyzed the transcriptional changes due to COVID-19 in multiple cell types. The integration of data from multiple organs enabled the identification of systemic transcriptional changes.ResultsComputational cross-organ analysis for endothelial cells and macrophages identified systemic transcriptional changes in these cell types in COVID-19 samples. In addition, analysis of gene modules showed enrichment of specific signaling pathways across multiple organs in COVID-19 autopsies.ConclusionsAltogether, the COVID Tissue Atlas enables the investigation of both cell type-specific and cross-organ transcriptional responses to COVID-19, providing insights into the molecular networks affected by the disease and highlighting novel potential targets for therapies and drug development.FundingThe Chan-Zuckerberg Initiative, The Chan-Zuckerberg Biohub.