학술논문

Genomic Analysis of Historical Cases with Positive Newborn Screens for Short-Chain Acyl-CoA Dehydrogenase Deficiency Shows That a Validated Second-Tier Biochemical Test Can Replace Future Sequencing
Document Type
article
Source
International Journal of Neonatal Screening. 6(2)
Subject
Biological Sciences
Biomedical and Clinical Sciences
Genetics
Genetic Testing
Neurodegenerative
Pediatric
Clinical Research
Prevention
Human Genome
Perinatal Period - Conditions Originating in Perinatal Period
Biotechnology
Brain Disorders
4.2 Evaluation of markers and technologies
Aetiology
Detection
screening and diagnosis
2.1 Biological and endogenous factors
newborn screening
short-chain acyl-CoA dehydrogenase deficiency
SCADD
ACADS
second-tier testing
ethylmalonic acid
exome sequence
butyrylcarnitine
Language
Abstract
Short-chain acyl-CoA dehydrogenase deficiency (SCADD) is a rare autosomal recessive disorder of β-oxidation caused by pathogenic variants in the ACADS gene. Analyte testing for SCADD in blood and urine, including newborn screening (NBS) using tandem mass spectrometry (MS/MS) on dried blood spots (DBSs), is complicated by the presence of two relatively common ACADS variants (c.625G>A and c.511C>T). Individuals homozygous for these variants or compound heterozygous do not have clinical disease but do have reduced short-chain acyl-CoA dehydrogenase (SCAD) activity, resulting in elevated blood and urine metabolites. As part of a larger study of the potential role of exome sequencing in NBS in California, we reviewed ACADS sequence and MS/MS data from DBSs from a cohort of 74 patients identified to have SCADD. Of this cohort, approximately 60% had one or more of the common variants and did not have the two rare variants, and thus would need no further testing. Retrospective analysis of ethylmalonic acid, glutaric acid, 2-hydroxyglutaric acid, 3-hydroxyglutaric acid, and methylsuccinic acid demonstrated that second-tier testing applied before the release of the newborn screening result could reduce referrals by over 50% and improve the positive predictive value for SCADD to above 75%.