학술논문

Mutational landscape of gastric adenocarcinoma in Chinese: Implications for prognosis and therapy
Document Type
article
Source
Proceedings of the National Academy of Sciences of the United States of America. 112(4)
Subject
Biological Sciences
Biomedical and Clinical Sciences
Genetics
Oncology and Carcinogenesis
Biotechnology
Cancer
Breast Cancer
Human Genome
Aetiology
2.1 Biological and endogenous factors
Good Health and Well Being
Adenocarcinoma
Age Factors
Asian People
Case-Control Studies
China
DNA Mutational Analysis
Databases
Nucleic Acid
Disease-Free Survival
Female
Genome-Wide Association Study
Homologous Recombination
Humans
Male
Mutation
Neoplasm Proteins
Stomach Neoplasms
Survival Rate
clonality
exome sequencing
mutation
ERBB
BRCA2
Language
Abstract
Gastric cancer (GC) is a highly heterogeneous disease. To identify potential clinically actionable therapeutic targets that may inform individualized treatment strategies, we performed whole-exome sequencing on 78 GCs of differing histologies and anatomic locations, as well as whole-genome sequencing on two GC cases, each with three primary tumors and two matching lymph node metastases. The data showed two distinct GC subtypes with either high-clonality (HiC) or low-clonality (LoC). The HiC subtype of intratumoral heterogeneity was associated with older age, TP53 (tumor protein P53) mutation, enriched C > G transition, and significantly shorter survival, whereas the LoC subtype was associated with younger age, ARID1A (AT rich interactive domain 1A) mutation, and significantly longer survival. Phylogenetic tree analysis of whole-genome sequencing data from multiple samples of two patients supported the clonal evolution of GC metastasis and revealed the accumulation of genetic defects that necessitate combination therapeutics. The most recurrently mutated genes, which were validated in a separate cohort of 216 cases by targeted sequencing, were members of the homologous recombination DNA repair, Wnt, and PI3K-ERBB pathways. Notably, the drugable NRG1 (neuregulin-1) and ERBB4 (V-Erb-B2 avian erythroblastic leukemia viral oncogene homolog 4) ligand-receptor pair were mutated in 10% of GC cases. Mutations of the BRCA2 (breast cancer 2, early onset) gene, found in 8% of our cohort and validated in The Cancer Genome Atlas GC cohort, were associated with significantly longer survivals. These data define distinct clinicogenetic forms of GC in the Chinese population that are characterized by specific mutation sets that can be investigated for efficacy of single and combination therapies.