학술논문

Mapping genomic loci implicates genes and synaptic biology in schizophrenia
Document Type
article
Author
Trubetskoy, VassilyPardiñas, Antonio FQi, TingPanagiotaropoulou, GeorgiaAwasthi, SwapnilBigdeli, Tim BBryois, JulienChen, Chia-YenDennison, Charlotte AHall, Lynsey SLam, MaxWatanabe, KyokoFrei, OleksandrGe, TianHarwood, Janet CKoopmans, FrankMagnusson, SigurdurRichards, Alexander LSidorenko, JuliaWu, YangZeng, JianGrove, JakobKim, MinsooLi, ZhiqiangVoloudakis, GeorgiosZhang, WenAdams, MarkAgartz, IngridAtkinson, Elizabeth GAgerbo, EsbenAl Eissa, MariamAlbus, MargotAlexander, MadelineAlizadeh, Behrooz ZAlptekin, KöksalAls, Thomas DAmin, FarooqArolt, VolkerArrojo, ManuelAthanasiu, LaviniaAzevedo, Maria HelenaBacanu, Silviu ABass, Nicholas JBegemann, MartinBelliveau, Richard ABene, JuditBenyamin, BebenBergen, Sarah EBlasi, GiuseppeBobes, JulioBonassi, StefanoBraun, AliceBressan, Rodrigo AffonsecaBromet, Evelyn JBruggeman, RichardBuckley, Peter FBuckner, Randy LBybjerg-Grauholm, JonasCahn, WiepkeCairns, Murray JCalkins, Monica ECarr, Vaughan JCastle, DavidCatts, Stanley VChambert, Kimberley DChan, Raymond CKChaumette, BorisCheng, WeiCheung, Eric FCChong, Siow AnnCohen, DavidConsoli, AngèleCordeiro, QuirinoCostas, JavierCurtis, CharlesDavidson, MichaelDavis, Kenneth Lde Haan, LieuweDegenhardt, FranziskaDeLisi, Lynn EDemontis, DitteDickerson, FaithDikeos, DimitrisDinan, TimothyDjurovic, SrdjanDuan, JubaoDucci, GiuseppeDudbridge, FrankEriksson, Johan GFañanás, LourdesFaraone, Stephen VFiorentino, AlessiaForstner, AndreasFrank, JosefFreimer, Nelson BFromer, MenachemFrustaci, AlessandraGadelha, AryGenovese, GiulioGershon, Elliot S
Source
Nature. 604(7906)
Subject
Brain Disorders
Human Genome
Mental Health
Schizophrenia
Serious Mental Illness
Biotechnology
Neurosciences
Genetics
Aetiology
2.1 Biological and endogenous factors
Alleles
Genetic Predisposition to Disease
Genome-Wide Association Study
Genomics
Humans
Polymorphism
Single Nucleotide
Indonesia Schizophrenia Consortium
PsychENCODE
Psychosis Endophenotypes International Consortium
SynGO Consortium
Schizophrenia Working Group of the Psychiatric Genomics Consortium
General Science & Technology
Language
Abstract
Schizophrenia has a heritability of 60-80%1, much of which is attributable to common risk alleles. Here, in a two-stage genome-wide association study of up to 76,755 individuals with schizophrenia and 243,649 control individuals, we report common variant associations at 287 distinct genomic loci. Associations were concentrated in genes that are expressed in excitatory and inhibitory neurons of the central nervous system, but not in other tissues or cell types. Using fine-mapping and functional genomic data, we identify 120 genes (106 protein-coding) that are likely to underpin associations at some of these loci, including 16 genes with credible causal non-synonymous or untranslated region variation. We also implicate fundamental processes related to neuronal function, including synaptic organization, differentiation and transmission. Fine-mapped candidates were enriched for genes associated with rare disruptive coding variants in people with schizophrenia, including the glutamate receptor subunit GRIN2A and transcription factor SP4, and were also enriched for genes implicated by such variants in neurodevelopmental disorders. We identify biological processes relevant to schizophrenia pathophysiology; show convergence of common and rare variant associations in schizophrenia and neurodevelopmental disorders; and provide a resource of prioritized genes and variants to advance mechanistic studies.