학술논문

Comparative genomics reveals a dynamic genome evolution in the ectomycorrhizal milk‐cap (Lactarius) mushrooms
Document Type
article
Source
New Phytologist. 235(1)
Subject
Biological Sciences
Ecology
Genetics
Microbiology
Plant Biology
Human Genome
Biotechnology
Agaricales
Animals
Basidiomycota
Evolution
Molecular
Genome
Fungal
Genomics
Milk
Mycorrhizae
Phylogeny
Symbiosis
comparative genomics
ectomycorrhizal fungi
proteases
Russulales
trait evolution
Agricultural and Veterinary Sciences
Plant Biology & Botany
Plant biology
Climate change impacts and adaptation
Ecological applications
Language
Abstract
Ectomycorrhizal fungi play a key role in forests by establishing mutualistic symbioses with woody plants. Genome analyses have identified conserved symbiosis-related traits among ectomycorrhizal fungal species, but the molecular mechanisms underlying host specificity remain poorly known. We sequenced and compared the genomes of seven species of milk-cap fungi (Lactarius, Russulales) with contrasting host specificity. We also compared these genomes with those of symbiotic and saprotrophic Russulales species, aiming to identify genes involved in their ecology and host specificity. The size of Lactarius genomes is significantly larger than other Russulales species, owing to a massive accumulation of transposable elements and duplication of dispensable genes. As expected, their repertoire of genes coding for plant cell wall-degrading enzymes is restricted, but they retained a substantial set of genes involved in microbial cell wall degradation. Notably, Lactarius species showed a striking expansion of genes encoding proteases, such as secreted ectomycorrhiza-induced sedolisins. A high copy number of genes coding for small secreted LysM proteins and Lactarius-specific lectins were detected, which may be linked to host specificity. This study revealed a large diversity in the genome landscapes and gene repertoires within Russulaceae. The known host specificity of Lactarius symbionts may be related to mycorrhiza-induced species-specific genes, including secreted sedolisins.