학술논문

Host–microbe interactions have shaped the genetic architecture of inflammatory bowel disease
Document Type
article
Author
Jostins, LukeRipke, StephanWeersma, Rinse KDuerr, Richard HMcGovern, Dermot PHui, Ken YLee, James CPhilip Schumm, LSharma, YashodaAnderson, Carl AEssers, JonahMitrovic, MitjaNing, KaidaCleynen, IsabelleTheatre, EmilieSpain, Sarah LRaychaudhuri, SoumyaGoyette, PhilippeWei, ZhiAbraham, ClaraAchkar, Jean-PaulAhmad, TariqAmininejad, LeilaAnanthakrishnan, Ashwin NAndersen, VibekeAndrews, Jane MBaidoo, LeonardBalschun, TobiasBampton, Peter ABitton, AlainBoucher, GabrielleBrand, StephanBüning, CarstenCohain, AriellaCichon, SvenD’Amato, MauroDe Jong, DirkDevaney, Kathy LDubinsky, MarlaEdwards, CathrynEllinghaus, DavidFerguson, Lynnette RFranchimont, DenisFransen, KarinGearry, RichardGeorges, MichelGieger, ChristianGlas, JürgenHaritunians, TalinHart, AilsaHawkey, ChrisHedl, MatijaHu, XinliKarlsen, Tom HKupcinskas, LimasKugathasan, SubraLatiano, AnnaLaukens, DebbyLawrance, Ian CLees, Charlie WLouis, EdouardMahy, GillianMansfield, JohnMorgan, Angharad RMowat, CraigNewman, WilliamPalmieri, OrazioPonsioen, Cyriel YPotocnik, UrosPrescott, Natalie JRegueiro, MiguelRotter, Jerome IRussell, Richard KSanderson, Jeremy DSans, MiquelSatsangi, JackSchreiber, StefanSimms, Lisa ASventoraityte, JurgitaTargan, Stephan RTaylor, Kent DTremelling, MarkVerspaget, Hein WDe Vos, MartineWijmenga, CiscaWilson, David CWinkelmann, JulianeXavier, Ramnik JZeissig, SebastianZhang, BinZhang, Clarence KZhao, HongyuSilverberg, Mark SAnnese, VitoHakonarson, HakonBrant, Steven RRadford-Smith, GrahamMathew, Christopher GRioux, John DSchadt, Eric E
Source
Nature. 491(7422)
Subject
Epidemiology
Biological Sciences
Health Sciences
Genetics
Digestive Diseases
Human Genome
Inflammatory Bowel Disease
Biotechnology
Autoimmune Disease
Crohn's Disease
2.1 Biological and endogenous factors
Aetiology
Inflammatory and immune system
Oral and gastrointestinal
Colitis
Ulcerative
Crohn Disease
Genetic Predisposition to Disease
Genome
Human
Genome-Wide Association Study
Haplotypes
Host-Pathogen Interactions
Humans
Inflammatory Bowel Diseases
Mycobacterium
Mycobacterium Infections
Mycobacterium tuberculosis
Phenotype
Polymorphism
Single Nucleotide
Reproducibility of Results
International IBD Genetics Consortium
General Science & Technology
Language
Abstract
Crohn's disease and ulcerative colitis, the two common forms of inflammatory bowel disease (IBD), affect over 2.5 million people of European ancestry, with rising prevalence in other populations. Genome-wide association studies and subsequent meta-analyses of these two diseases as separate phenotypes have implicated previously unsuspected mechanisms, such as autophagy, in their pathogenesis and showed that some IBD loci are shared with other inflammatory diseases. Here we expand on the knowledge of relevant pathways by undertaking a meta-analysis of Crohn's disease and ulcerative colitis genome-wide association scans, followed by extensive validation of significant findings, with a combined total of more than 75,000 cases and controls. We identify 71 new associations, for a total of 163 IBD loci, that meet genome-wide significance thresholds. Most loci contribute to both phenotypes, and both directional (consistently favouring one allele over the course of human history) and balancing (favouring the retention of both alleles within populations) selection effects are evident. Many IBD loci are also implicated in other immune-mediated disorders, most notably with ankylosing spondylitis and psoriasis. We also observe considerable overlap between susceptibility loci for IBD and mycobacterial infection. Gene co-expression network analysis emphasizes this relationship, with pathways shared between host responses to mycobacteria and those predisposing to IBD.