학술논문

A complete reference genome improves analysis of human genetic variation
Document Type
article
Source
Science. 376(6588)
Subject
Biological Sciences
Bioinformatics and Computational Biology
Genetics
Biotechnology
Human Genome
Aetiology
2.1 Biological and endogenous factors
Generic health relevance
Genetic Variation
Genome
Human
Genomics
Humans
Reference Standards
Sequence Analysis
DNA
General Science & Technology
Language
Abstract
Compared to its predecessors, the Telomere-to-Telomere CHM13 genome adds nearly 200 million base pairs of sequence, corrects thousands of structural errors, and unlocks the most complex regions of the human genome for clinical and functional study. We show how this reference universally improves read mapping and variant calling for 3202 and 17 globally diverse samples sequenced with short and long reads, respectively. We identify hundreds of thousands of variants per sample in previously unresolved regions, showcasing the promise of the T2T-CHM13 reference for evolutionary and biomedical discovery. Simultaneously, this reference eliminates tens of thousands of spurious variants per sample, including reduction of false positives in 269 medically relevant genes by up to a factor of 12. Because of these improvements in variant discovery coupled with population and functional genomic resources, T2T-CHM13 is positioned to replace GRCh38 as the prevailing reference for human genetics.