학술논문
Genome-wide association study yields variants at 20p12.2 that associate with urinary bladder cancer
Document Type
Academic Journal
Author
Rafnar, Thorunn; Sulem, Patrick; Thorleifsson, Gudmar; Vermeulen, Sita H.; Helgason, Hannes; Saemundsdottir, Jona; Gudjonsson, Sigurjon A.; Sigurdsson, Asgeir; Stacey, Simon N.; Gudmundsson, Julius; Johannsdottir, Hrefna; Alexiusdottir, Kristin; Petursdottir, Vigdis; Nikulasson, Sigfus; Geirsson, Gudmundur; Jonsson, Thorvaldur; Aben, Katja K.H.; Grotenhuis, Anne J.; Verhaegh, Gerald W.; Dudek, Aleksandra M.; Witjes, J. Alfred; van der Heijden, Antoine G.; Vrieling, Alina; Galesloot, Tessel E.; De Juan, Ana; Panadero, Angeles; Rivera, Fernando; Hurst, Carolyn; Bishop, D. Timothy; Sak, Sei C.; Choudhury, Ananya; Teo, Mark T.W.; Arici, Cecilia; Carta, Angela; Toninelli, Elena; de Verdier, Petra; Rudnai, Peter; Gurzau, Eugene; Koppova, Kvetoslava; van der Keur, Kirstin A.; Lurkin, Irene; Goossens, Mieke; Kellen, Eliane; Guarrera, Simonetta; Russo, Alessia; Critelli, Rossana; Sacerdote, Carlotta; Vineis, Paolo; Krucker, Clémentine; Zeegers, Maurice P.; Gerullis, Holger; Ovsiannikov, Daniel; Volkert, Frank; Hengstler, Jan G.; Selinski, Silvia; Magnusson, Olafur T.; Masson, Gisli; Kong, Augustine; Gudbjartsson, Daniel; Lindblom, Annika; Zwarthoff, Ellen; Porru, Stefano; Golka, Klaus; Buntinx, Frank; Matullo, Giuseppe; Kumar, Rajiv; Mayordomo, José I.; Steineck, D. Gunnar; Kiltie, Anne E.; Jonsson, Eirikur; Radvanyi, François; Knowles, Margaret A.; Thorsteinsdottir, Unnur; Kiemeney, Lambertus A.; Stefansson, Kari
Source
Human Molecular Genetics. Oct 15, 2014 23(20):5545-5557
Subject
Language
English
ISSN
0964-6906
Abstract
Genome-wide association studies (GWAS) of urinary bladder cancer (UBC) have yielded common variants at 12 loci that associate with risk of the disease. We report here the results of a GWAS of UBC including 1670 UBC cases and 90 180 controls, followed by replication analysis in additional 5266 UBC cases and 10 456 controls. We tested a dataset containing 34.2 million variants, generated by imputation based on whole-genome sequencing of 2230 Icelanders. Several correlated variants at 20p12, represented by rs62185668, show genome-wide significant association with UBC after combining discovery and replication results (OR = 1.19, P = 1.5 × 10 for rs62185668-A, minor allele frequency = 23.6%). The variants are located in a non-coding region approximately 300 kb upstream from the JAG1 gene, an important component of the Notch signaling pathways that may be oncogenic or tumor suppressive in several forms of cancer. Our results add to the growing number of UBC risk variants discovered through GWAS.