학술논문
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models
Document Type
Academic Journal
Author
Hucka, M; Finney, A; Sauro, H M.; Bolouri, H; Doyle, J C.; Kitano, H; Arkin, A P.; Bornstein, B J.; Bray, D; Cornish-Bowden, A; Cuellar, A A.; Dronov, S; Gilles, E D.; Ginkel, M; Gor, V; Goryanin, I I.; Hedley, W J.; Hodgman, T C.; Hofmeyr, J-H; Hunter, P J.; Juty, N S.; Kasberger, J L.; Kremling, A; Kummer, U; Le Novère, N; Loew, L M.; Lucio, D; Mendes, P; Minch, E; Mjolsness, E D.; Nakayama, Y; Nelson, M R.; Nielsen, P F.; Sakurada, T; Schaff, J C.; Shapiro, B E.; Shimizu, T S.; Spence, H D.; Stelling, J; Takahashi, K; Tomita, M; Wagner, J; Wang, J
Source
Bioinformatics. Mar 01, 2003 19(4):524-531
Subject
Language
English
ISSN
1367-4803
Abstract
MOTIVATION:: Molecular biotechnology now makes it possible to build elaborate systems models, but the systems biology community needs information standards if models are to be shared, evaluated and developed cooperatively. RESULTS:: We summarize the Systems Biology Markup Language (SBML) Level 1, a free, open, XML-based format for representing biochemical reaction networks. SBML is a software-independent language for describing models common to research in many areas of computational biology, including cell signaling pathways, metabolic pathways, gene regulation, and others. AVAILABILITY:: The specification of SBML Level 1 is freely available from http://www.sbml.org/ CONTACT