학술논문

Aqueous Channels within Apolar Peptide Aggregates: Solvated Helix of the α -aminoisobutyric Acid (Aib)-Containing Peptide Boc-(Aib-Ala-Leu)3-Aib-OMe· 2H2O· CH3OH in Crystals
Document Type
research-article
Source
Proceedings of the National Academy of Sciences of the United States of America, 1988 Jan . 85(2), 299-303.
Subject
Chemistry
Apolar Decapeptide
Hydrogen Bond
Helix Distortion
Amphiphilic Helix Mimic
Transmembrane Peptide Channel
Molecules
Atoms
Hydrogen bonds
Oxygen
Coordinate systems
Hydrogen
Crystals
Solvents
Water channels
Amino acids
Language
English
ISSN
00278424
Abstract
Although the peptide Boc-Aib1-Ala2-Leu$^{3}$-Aib4-Ala5-Leu$^{6}$-Aib7-Ala8-Leu$^{9}$-Aib10-OMe [with a t-butoxycarbonyl (Boc) blocking group at the amino terminus, a methyl ester (OMe) at the carboxyl terminus, and four α -aminoisobutyric (Aib) residues] has a 3-fold repeat of residues, the helix formed by the peptide backbone is irregular. The carboxyl-terminal half assumes an α -helical form with torsion angles φ and ψ of approximately -60 degrees and -45 degrees, respectively, whereas the amino-terminal half is distorted by an insertion of a water molecule between the amide nitrogen of Ala5 [N(5)] and the carbonyl oxygen of Ala2 [O(2)]. The water molecule W(1) acts as a bridge by forming hydrogen bonds N(5)⋯ W(1) (2.93 angstrom) and W(1)⋯ O(2) (2.86 angstrom). The distortion of the helix exposes the carbonyl oxygen of Aib1 and Aib4 to the outside environment, with the consequence that the helix assumes an amphiphilic character despite having all apolar residues. Neighboring helices in the crystal run in antiparallel directions. On one side of a helix there are only hydrophobic contacts with efficient interdigitation of leucine side chains with those from the neighboring helix. On the other side of the helix there are hydrogen bonds between protruding carbonyl oxygens and four water molecules that separate two neighboring helices. Along the helix axis the helices bind head-to-tail with a direct hydrogen bond N(2)⋯ O(9) (3.00 angstrom). Crystals grown from methanol/water solution are in space group P21 with a = 15.778 ± 0.004 angstrom, b = 11.228 ± 0.002 angstrom, c = 18.415 ± 0.003 angstrom, β = 102.10 ± 0.02 degrees, and two formula units per cell for C49H88N10O$_{13}\cdot $2H2O· CH3OH. The overall agreement factor R is 7.5% for 3394 reflections observed with intensities >3σ (F), and the resolution is 0.90 angstrom.