학술논문
Wikidata as a knowledge graph for the life sciences
Document Type
Report
Author
Waagmeester, Andra; Stupp, Gregory; Burgstaller-Muehlbacher, Sebastian; Good, Benjamin M; Griffith, Malachi; Griffith, Obi L; Hanspers, Kristina; Hermjakob, Henning; Hudson, Toby S; Hybiske, Kevin; Keating, Sarah M; Manske, Magnus; Mayers, Michael; Mietchen, Daniel; Mitraka, Elvira; Pico, Alexander R; Putman, Timothy; Riutta, Anders; Queralt-Rosinach, Nuria; Schriml, Lynn M; Shafee, Thomas; Slenter, Denise; Stephan, Ralf; Thornton, Katherine; Tsueng, Ginger; Tu, Roger; Ul-Hasan, Sabah; Willighagen, Egon; Wu, Chunlei; Su, Andrew I
Source
eLife. March 17, 2020, Vol. 9
Subject
Language
English
ISSN
2050-084X
Abstract
Wikidata is a community-maintained knowledge base that has been assembled from repositories in the fields of genomics, proteomics, genetic variants, pathways, chemical compounds, and diseases, and that adheres to the FAIR principles of findability, accessibility, interoperability and reusability. Here we describe the breadth and depth of the biomedical knowledge contained within Wikidata, and discuss the open-source tools we have built to add information to Wikidata and to synchronize it with source databases. We also demonstrate several use cases for Wikidata, including the crowdsourced curation of biomedical ontologies, phenotype-based diagnosis of disease, and drug repurposing.
Byline: Andra Waagmeester, Gregory Stupp, Sebastian Burgstaller-Muehlbacher, Benjamin M Good, Malachi Griffith, Obi L Griffith, Kristina Hanspers, Henning Hermjakob, Toby S Hudson, Kevin Hybiske, Sarah M Keating, Magnus Manske, Michael [...]
Byline: Andra Waagmeester, Gregory Stupp, Sebastian Burgstaller-Muehlbacher, Benjamin M Good, Malachi Griffith, Obi L Griffith, Kristina Hanspers, Henning Hermjakob, Toby S Hudson, Kevin Hybiske, Sarah M Keating, Magnus Manske, Michael [...]