학술논문
Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota
Document Type
Report
Author
Wang, Jun; Thingholm, Louise B; Skiecevi[c caron]ien[e dot], Jurgita; Rausch, Philipp; Kummen, Martin; Hov, Johannes R; Degenhardt, Frauke; Heinsen, Femke-Anouska; Rühlemann, Malte C; Szymczak, Silke; Holm, Kristian; Esko, Tönu; Sun, Jun; Pricop-Jeckstadt, Mihaela; Al-Dury, Samer; Bohov, Pavol; Bethune, Jörn; Sommer, Felix; Ellinghaus, David; Berge, Rolf K; Hübenthal, Matthias; Koch, Manja; Schwarz, Karin; Rimbach, Gerald; Hübbe, Patricia; Pan, Wei-Hung; Sheibani-Tezerji, Raheleh; Häsler, Robert; Rosenstiel, Philipp; D'Amato, Mauro; Cloppenborg-Schmidt, Katja; Künzel, Sven; Laudes, Matthias; Marschall, Hanns-Ulrich; Lieb, Wolfgang; Nöthlings, Ute; Karlsen, Tom H; Baines, John F; Franke, Andre
Source
Nature Genetics. November, 2016, Vol. 48 Issue 11, p1396, 11 p.
Subject
Language
English
ISSN
1061-4036
Abstract
Human gut microbiota is an important determinant for health and disease, and recent studies emphasize the numerous factors shaping its diversity. Here we performed a genome-wide association study (GWAS) of the gut microbiota using two cohorts from northern Germany totaling 1,812 individuals. Comprehensively controlling for diet and non-genetic parameters, we identify genome-wide significant associations for overall microbial variation and individual taxa at multiple genetic loci, including the VDR gene (encoding vitamin D receptor). We observe significant shifts in the microbiota of Vdr[sup.-/-] mice relative to control mice and correlations between the microbiota and serum measurements of selected bile and fatty acids in humans, including known ligands and downstream metabolites of VDR. Genome-wide significant (P [less than] 5 x 10[sup.-8]) associations at multiple additional loci identify other important points of host-microbe intersection, notably several disease susceptibility genes and sterol metabolism pathway components. Non-genetic and genetic factors each account for approximately 10% of the variation in gut microbiota, whereby individual effects are relatively small.
Author(s): Jun Wang [1, 2]; Louise B Thingholm [3]; Jurgita Skiecevi[c caron]ien[e dot] [3]; Philipp Rausch [1, 2]; Martin Kummen [4, 5, 6, 7]; Johannes R Hov [4, 5, 6, [...]
Author(s): Jun Wang [1, 2]; Louise B Thingholm [3]; Jurgita Skiecevi[c caron]ien[e dot] [3]; Philipp Rausch [1, 2]; Martin Kummen [4, 5, 6, 7]; Johannes R Hov [4, 5, 6, [...]