학술논문

Expert-level automated sleep staging of long-term scalp electroencephalography recordings using deep learning
ORIGINAL ARTICLE
Document Type
Academic Journal
Source
SLEEP. November 2020, Vol. 43 Issue 11, p1q, 12 p.
Subject
Cable News Network
Massachusetts General Hospital
Data warehousing/data mining
Neural network
Algorithm
Data mining
Algorithms
Machine learning
Sleep
Electroencephalography
Artificial neural networks
Automation
Mechanization
Neural networks
Language
English
ISSN
0161-8105
Abstract
Introduction Long-term scalp EEG recordings (typically > 12 h in duration) are widely used for clinical evaluation of patients with confirmed or suspected epilepsy [1] as these studies are more [...]
Study Objectives: Develop a high-performing, automated sleep scoring algorithm that can be applied to long-term scalp electroencephalography (EEG) recordings. Methods: Using a clinical dataset of polysomnograms from 6,431 patients (MGH-PSG dataset), we trained a deep neural network to classify sleep stages based on scalp EEG data. The algorithm consists of a convolutional neural network for feature extraction, followed by a recurrent neural network that extracts temporal dependencies of sleep stages. The algorithm's inputs are four scalp EEG bipolar channels (F3-C3, C3-01, F4-C4, and C4-02), which can be derived from any standard PSG or scalp EEG recording. We initially trained the algorithm on the MGH-PSG dataset and used transfer learning to fine-tune it on a dataset of long-term (24-72 h) scalp EEG recordings from 112 patients (scalpEEG dataset). Results: The algorithm achieved a Cohen's kappa of 0.74 on the MGH-PSG holdout testing set and cross-validated Cohen's kappa of 0.78 after optimization on the scalpEEG dataset. The algorithm also performed well on two publicly available PSG datasets, demonstrating high generalizability. Performance on all datasets was comparable to the inter-rater agreement of human sleep staging experts (Cohen's kappa ~ 0.75 [+ or -] 0.11). The algorithm's performance on long-term scalp EEGs was robust over a wide age range and across common EEG background abnormalities. Conclusion: We developed a deep learning algorithm that achieves human expert level sleep staging performance on long-term scalp EEG recordings. This algorithm, which we have made publicly available, greatly facilitates the use of large long-term EEG clinical datasets for sleep-related research. Key words: sleep staging; deep learning; EEG; machine learning; big data