학술논문

Patterns of Population Structure and Introgression Among Recently Differentiated Drosophila melanogaster Populations
Document Type
Academic Journal
Source
Molecular Biology and Evolution. November, 2022, Vol. 39 Issue 11
Subject
Central African Republic
Zimbabwe
North America
Ethiopia
China
Language
English
ISSN
0737-4038
Abstract
Despite a century of genetic analysis, the evolutionary processes that have generated the patterns of exceptional genetic and phenotypic variation in the model organism Drosophila melanogaster remains poorly understood. In particular, how genetic variation is partitioned within its putative ancestral range in Southern Africa remains unresolved. Here, we study patterns of population genetic structure, admixture, and the spatial structuring of candidate incompatibility alleles across a global sample, including 223 new accessions, predominantly from remote regions in Southern Africa. We identify nine major ancestries, six that primarily occur in Africa and one that has not been previously described. We find evidence for both contemporary and historical admixture between ancestries, with admixture rates varying both within and between continents. For example, while previous work has highlighted an admixture zone between broadly defined African and European ancestries in the Caribbean and southeastern USA, we identify West African ancestry as the most likely African contributor. Moreover, loci showing the strongest signal of introgression between West Africa and the Caribbean/southeastern USA include several genes relating to neurological development and male courtship behavior, in line with previous work showing shared mating behaviors between these regions. Finally, while we hypothesized that potential incompatibility loci may contribute to population genetic structure across the range of D. melanogaster; these loci are, on average, not highly differentiated between ancestries. This work contributes to our understanding of the evolutionary history of a key model system, and provides insight into the partitioning of diversity across its range. Key words: demography, genetic differentiation, genetic incompatibility, gene flow, reproductive isolation.
Introduction Drosophila melanogaster remains one of the most powerful genetic systems to understand the molecular underpinnings of phenotypic and fitness variation since its development in the early 20th century (Morgan [...]