학술논문

Determination of the Minimum Population Size of Pumas (Puma concolor) Through Fecal DNA Analysis in Two Protected Cerrado Areas in the Brazilian Southeast
Document Type
Report
Author abstract
Source
Biotropica. Sept, 2007, Vol. 39 Issue 5, p647, 8 p.
Subject
Cytochrome b -- Analysis
Genetic research -- Analysis
DNA -- Analysis
Language
English
ISSN
0006-3606
Abstract
To purchase or authenticate to the full-text of this article, please visit this link: http://dx.doi.org/10.1111/j.1744-7429.2007.00315.x Byline: Renata Alonso Miotto (13), Fernando Pacheco Rodrigues (1), Giordano Ciocheti (2), Pedro Manoel Galetti (1) Keywords: conservation; cytochrome b; individual identification; metapopulation; microsatellites; noninvasive analysis; species diagnosis Abstract: ABSTRACT Pumas (Puma concolor) are an endangered species due to habitat loss and the ever-growing conflict with expanding human populations. We used genetic analysis of feces, a noninvasive study method, to determine the presence of pumas and their estimated minimum population in two protected areas in the northeast of Sao Paulo State, Brazil: Jatai Ecological Station and Vassununga State Park. We were able to identify the species that originally deposited the feces by means of amplification of a portion of the mitochondrial cytochrome b gene and comparison of this fragment with reference sequences from pumas and other carnivores present in the region. We used a panel containing four microsatellite loci to individualize each of the samples collected. Among the 20 fecal samples, we identified 10 as clearly belonging to pumas and two as belonging to ocelots (Leopardus pardalis), a species sympatric with P. concolor. By plotting the feces sampling points against a satellite image, we determined the presence of at least nine puma individuals in the region, three in the Jatai Ecological Station, four in the Vassununga State Park, and two in their surroundings. The identity probability was 0.0001 and the occurrence of allelic dropout was 10.6 percent. The presence of pumas, the estimate of their minimum population size, as well as their distribution, constitute an important tool for the implementation of management and conservation programs in the areas studied and their surroundings. Abstract (Spanish): RESUMO Pumas (Puma concolor) sao animais ameacados devido a perda de habitats e ao crescente conflito com populacoes humanas em expansao. Utilizamos um metodo nao invasivo de estudo, a analise genetica de fezes, para determinar a presenca e estimar o numero populacional minimo de pumas em duas Unidades de Conservacao ao nordeste do estado de Sao Paulo, Brasil: a Estacao Ecologica do Jatai e o Parque Estadual do Vassununga. A partir da amplificacao de uma porcao do gene citocromo b do genoma mitocondrial e da comparacao deste fragmento com sequencias de referencia de outros carnivoros presentes na regiao, pudemos diagnosticar a especie que originalmente depositou as fezes e, por meio de um painel de 4 loci de microssatelites, individualizar cada uma das amostras coletadas em campo. Dentre as 20 fezes coletadas, diagnosticamos 10 como realmente pertencentes a especie e 2 como provenientes de jaguatiricas (Leopardus pardalis), especie simpatrica aP. concolor. Determinamos a presenca de ao menos 9 pumas na regiao, e plotando os pontos de coleta sobre uma imagem de satelite, verificamos a ocorrencia de 3 individuos na Estacao Ecologica de Jatai, 4 no Parque Estadual do Vassununga e dois nos entornos. A probabilidade de identidade foi de 0,0001 e a probabilidade de nao deteccao alelica de 10,6 porcentagem. A determinacao da presenca, a estimativa do tamanho populacional minimo e a distribuicao de pumas determinadas neste estudo podem fornecer subsidios para a implantacao dos planos de manejo e conservacao da especie, assim como dessas areas e de seus entornos. Author Affiliation: (1)Laboratorio de Biodiversidade Molecular e Citogenetica, Departamento de Genetica e Evolucao, Universidade Federal de Sao Carlos, Rodovia Washington Luis, km 235, 13565-905, Sao Carlos, Sao Paulo, Brazil (2)Laboratorio de Ecologia da Paisagem e Conservacao, Instituto de Biociencias, Universidade de Sao Paulo, Rua do Matao, Travessa 14, Cidade Universitaria, 05508-900, Sao Paulo, Brazil Article History: Received 9 May 2006; revision accepted 19 December 2006. Article note: (3) Corresponding author; e-mail: remiotto@yahoo.com.br