학술논문

Kernel Dimensionality Reduction evaluation on various dimensions of effective subspaces for cancer patient survival analysis
Document Type
Conference
Source
10th International Conference on Information Science, Signal Processing and their Applications (ISSPA 2010) Information Sciences Signal Processing and their Applications (ISSPA), 2010 10th International Conference on. :790-793 May, 2010
Subject
Signal Processing and Analysis
Components, Circuits, Devices and Systems
Training
Kernel
Support vector machines
Immune system
Cancer
Bioinformatics
Kernel Dimensionality Reduction (KDR)
Dimension of Effective Subspaces (K)
Language
Abstract
In this research, we have extended the use of Kernel Dimensionality Reduction (KDR) in the context of semi supervised learning in particular for micro-array DNA clustering application. We have proposed a new model call K-means-KDR for survival analysis which we aimed to improve the genes classification performance and study the dimension of effective subspaces in cancer patient survival analysis. KDR method was extended and combined with the K-means clustering technique, Cox's proportional hazards regression model and log rank test where KDR contributes in gene classification to determine subgroups from the patient's group. Results from the experiments have indicated that our model has outperformed Support Vector Machines (SVM) in gene classification. We also observed that the best value for dimension of effective subspaces (K) for microarray DNA data is between 10%–20% of the total patients.