학술논문

On identification of sinoatrial node in zebrafish heart based on functional time series from optical mapping
Document Type
Conference
Source
2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) Engineering in Medicine and Biology Society (EMBC), 2013 35th Annual International Conference of the IEEE. :6518-6521 Jul, 2013
Subject
Engineered Materials, Dielectrics and Plasmas
Heart
Storage area networks
Physiology
Optical imaging
Time series analysis
Biomedical optical imaging
Optical recording
Language
ISSN
1094-687X
1558-4615
Abstract
As a vertebrate cardiovascular model, the zebrafish heart has been used extensively in physiology research to study cardiac development and human cardiac disease. Optical mapping techniques provide an effective approach to record action potential propagation in the zebrafish heart. However, manual analysis of functional time series recorded from optical mapping can be laborious and time consuming. In this paper, a novel pipeline is proposed to assist physiologists in identifying the sinoatrial node (SAN) in zebrafish heart based on functional time series. First, the original optical mapping data are enhanced and averaged. Next, the heart is divided into small regions, and representative average time series are calculated. A ‘discretization of derivative’ (DoD) process is performed to model physiological similarity between signals. Finally, grouping is done on the DoD transformed representation, which is found to produce physiologically meaningful classification for SAN identification.