학술논문

Improving the Automatic Segmentation of Elongated Organs Using Geometrical Priors
Document Type
Conference
Source
2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI) Biomedical Imaging (ISBI), 2022 IEEE 19th International Symposium on. :1-4 Mar, 2022
Subject
Bioengineering
Computing and Processing
Photonics and Electrooptics
Signal Processing and Analysis
Training
Deep learning
Image segmentation
Systematics
Neural networks
Biological systems
Pancreas
Geometrical Prior
Medical Image Segmentation
Deep Learning
Tversky Loss
Language
ISSN
1945-8452
Abstract
Deep neural networks are widely used for automated organ segmentation as they achieve promising results for clinical applications. Some organs are more challenging to delineate than others, for instance due to low contrast at their boundaries. In this paper, we propose to improve the segmentation of elongated organs thanks to Geometrical Priors that can be introduced during training, using a local Tversky loss function, or at post-processing, using local thresholds. Both strategies do not introduce additional training parameters and can be easily applied to any existing network. The proposed method is evaluated on the challenging problem of pancreas segmentation. Results show that Geometrical Priors allow us to correct the systematic under-segmentation pattern of a state-of-the-art method, while preserving the overall segmentation quality.