학술논문

How to extract marker genes from microarray data sets
Document Type
Conference
Source
2007 29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society Engineering in Medicine and Biology Society, 2007. EMBS 2007. 29th Annual International Conference of the IEEE. :4215-4218 Aug, 2007
Subject
Bioengineering
Data mining
Independent component analysis
Gene expression
Principal component analysis
Probes
Matrix decomposition
RNA
Testing
Helium
Humans
Language
ISSN
1094-687X
1558-4615
Abstract
In this study we focus on classification tasks and apply matrix factorization techniques like principal component analysis (PCA), independent component analysis (ICA) and non-negative matrix factorization (NMF) to a microarray data set. The latter monitors the gene expression levels (GEL) of mononcytes and macrophages during and after differentiation. We show that these tools are able to identify relevant signatures in the deduced matrices and extract marker genes from these gene expression profiles (GEPs) without the need for extensive data bank search for appropriate functional annotations. With these marker genes corresponding test data sets can then easily be classified into related diagnostic categories.