학술논문

Modular Semantic Tagging of Medline Abstracts and Its Use in Inferring Regulatory Networks
Document Type
Conference
Source
2011 IEEE Fifth International Conference on Semantic Computing Semantic Computing (ICSC), 2011 Fifth IEEE International Conference on. :498-505 Sep, 2011
Subject
Signal Processing and Analysis
Communication, Networking and Broadcast Technologies
Components, Circuits, Devices and Systems
Computing and Processing
Semantics
Databases
Abstracts
Dictionaries
Servers
Pragmatics
Software
natural language processing
semantic annotation
standards
interoperability
linguistic annotation format
biological network inference
medline
Language
Abstract
We describe Meds tract Plus, a resource for mining relations from the Medline bibliographic database that is currently under construction. It was built on the remains of Meds tract, a previously created resource that included a bio-relation server and an acronym database. Meds tract Plus uses simple and scalable natural language processing modules to structure text, is designed with reusability and extendibility in mind, and adheres to the philosophy of the Linguistic Annotation Framework. We show how Meds tract Plus has been used to provide seeds for a novel approach to inferring transcriptional regulatory networks from gene expression data.