학술논문

SpikeOnChip : A Custom Embedded Platform for Neuronal Activity Recording and Analysis
Document Type
Periodical
Source
IEEE Transactions on Biomedical Circuits and Systems IEEE Trans. Biomed. Circuits Syst. Biomedical Circuits and Systems, IEEE Transactions on. 15(4):743-755 Aug, 2021
Subject
Bioengineering
Components, Circuits, Devices and Systems
Biochips
Field programmable gate arrays
Electrodes
Data acquisition
Biological tissues
Software
Neurons
Biomedical device
FPGA
low-power
micro-electrode array
neural cell interface
neural spikes
online analysis
system-on-chip bioinstrumentation
Language
ISSN
1932-4545
1940-9990
Abstract
In this paper we present SpikeOnChip, a custom embedded platform for neuronal activity recording and online analysis. The SpikeOnChip platform was developed in the context of automated drug testing and toxicology assessments on neural tissue made from human induced pluripotent stem cells. The system was developed with the following goals: to be small, autonomous and low power, to handle micro-electrode arrays with up to 256 electrodes, to reduce the amount of data generated from the recording, to be able to do computation during acquisition, and to be customizable. This led to the choice of a Field Programmable Gate Array System-On-Chip platform. This paper focuses on the embedded system for acquisition and processing with key features being the ability to record electrophysiological signals from multiple electrodes, detect biological activity on all channels online for recording, and do frequency domain spectral energy analysis online on all channels during acquisition. Development methodologies are also presented. The platform is finally illustrated in a concrete experiment with bicuculline being administered to grown human neural tissue through microfluidics, resulting in measurable effects in the spike recordings and activity. The presented platform provides a valuable new experimental instrument that can be further extended thanks to the programmable hardware and software.