학술논문

Recovery of Metabolomic Spectral Sources using Non-negative Matrix Factorization
Document Type
Conference
Source
2005 IEEE Engineering in Medicine and Biology 27th Annual Conference Engineering in Medicine and Biology Society, 2005. IEEE-EMBS 2005. 27th Annual International Conference of the. :4731-4734 2005
Subject
Bioengineering
Metabolomics
Animals
Clustering algorithms
Biomedical engineering
Cancer
Magnetic resonance
Organisms
Pattern recognition
Classification algorithms
Diseases
Language
ISSN
1094-687X
1558-4615
Abstract
1 H magnetic resonance spectra (MRS) of biofluids contain rich biochemical information about the metabolic status of an organism. Through the application of pattern recognition and classification algorithms, such data have been shown to provide information for disease diagnosis as well as the effects of potential therapeutics. In this paper we describe a novel approach, using non-negative matrix factorization (NMF), for rapidly identifying metabolically meaningful spectral patterns in 1 H MRS. We show that the intensities of these identified spectral patterns can be related to the onset of, and recovery from, toxicity in both a time-related and dose-related fashion. These patterns can be seen as a new type of biomarker for the biological effect under study. We demonstrate, using k-means clustering, that the recovered patterns can be used to characterize the metabolic status of the animal during the experiment.