학술논문

Active appearance segmentation for intensity inhomogeneity in light sheet fluorescence microscopy
Document Type
Conference
Source
2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI) Biomedical Imaging (ISBI), 2016 IEEE 13th International Symposium on. :217-220 Apr, 2016
Subject
Bioengineering
Signal Processing and Analysis
Shape
Active appearance model
Image segmentation
Distortion
Brain modeling
Mice
Training
Active Appearance Model
regularized Normalized Gradient Field
Light Sheet Fluorescence Microscopy
Segmentation
Language
ISSN
1945-8452
Abstract
Active Appearance Models (AAM) are used for annotating or segmenting shapes in biomedical images. Performance relies heavily on the image data used to train the AAM. In this paper we improve the generalization properties of the model by making it robust to slowly varying spatial intensity inhomogeneities which are often seen in Light Sheet Fluorescence Microscopy (LSFM) images. This robustness is achieved by modelling the appearance of an image as a regularized Normalized Gradient Field (rNGF). We perform two experiments to challenge the model. First it is tested using a repeated leave-one-out approach on images with minimal imperfections where the left out images are corrupted by a simulated bias field and segmented using the AAM. Secondly we test the model on LSFM images with common acquisition problems. In both experiments the proposed approach outperforms the often used AAM implementation based on Sum of Squared Differences.