학술논문

Variational Manifold Learning From Incomplete Data: Application to Multislice Dynamic MRI
Document Type
Periodical
Source
IEEE Transactions on Medical Imaging IEEE Trans. Med. Imaging Medical Imaging, IEEE Transactions on. 41(12):3552-3561 Dec, 2022
Subject
Bioengineering
Computing and Processing
Magnetic resonance imaging
Manifolds
Three-dimensional displays
Data models
Time series analysis
Convolutional neural networks
Volume measurement
Variational autoencoder
generative model
CNN
manifold approach
unsupervised learning
free-breathing cardiac magnetic resonance imaging (MRI)
image reconstruction
Language
ISSN
0278-0062
1558-254X
Abstract
Current deep learning-based manifold learning algorithms such as the variational autoencoder (VAE) require fully sampled data to learn the probability density of real-world datasets. However, fully sampled data is often unavailable in a variety of problems, including the recovery of dynamic and high-resolution magnetic resonance imaging (MRI). We introduce a novel variational approach to learn a manifold from undersampled data. The VAE uses a decoder fed by latent vectors, drawn from a conditional density estimated from the fully sampled images using an encoder. Since fully sampled images are not available in our setting, we approximate the conditional density of the latent vectors by a parametric model whose parameters are estimated from the undersampled measurements using back-propagation. We use the framework for the joint alignment and recovery of multi-slice free breathing and ungated cardiac MRI data from highly undersampled measurements. Experimental results demonstrate the utility of the proposed scheme in dynamic imaging alignment and reconstructions.