학술논문

Ensemble of Unsupervised Learned Image Representations Based On Variational Autoencoders for Lung Adenocarcinoma Subtype Differentiation
Document Type
Conference
Source
2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI) Biomedical Imaging (ISBI), 2023 IEEE 20th International Symposium on. :1-5 Apr, 2023
Subject
Bioengineering
Computing and Processing
Photonics and Electrooptics
Signal Processing and Analysis
Visualization
Histopathology
Lung
Lung cancer
Image representation
Throughput
Solids
Digital Pathology
Classification
Tissue Representation
Variational Autoencoder
Lung Adenocarcinoma
Language
ISSN
1945-8452
Abstract
Lung adenocarcinoma is a type of non-small cell lung cancer that accounts for about 40% of all lung cancers, which is divided into different molecular and histological subtypes associated with particular prognosis and treatment. Pathologists stratify for diagnosis mainly by its histo-morphological visual features and patterns, which tends to be challenging because of the nature of lung tissue, a mixture of histologically complex patterns and not having a specialized grading system. Here, an unsupervised computational approach based on an ensemble of tissue-specialized variational autoencoders, which were trained per histopathology subtype, to build an unsupervised embedded tissue-image representation. This representation was used to train a Random Forest classifier of three lung adenocarcinoma histology subtypes (lepidic, papillary and solid), and a 2D-visually interpretable projection from the learned embedded representation. Experimental results achieve an average F-score of 0.72 ± 0.05 in the test dataset and a well-separated 2D visual mapping of tissue subtypes.