학술논문

Approximating principal genetic components of subcortical shape
Document Type
Conference
Source
2017 IEEE 14th International Symposium on Biomedical Imaging (ISBI 2017) Biomedical Imaging (ISBI 2017), 2017 IEEE 14th International Symposium on. :1226-1230 Apr, 2017
Subject
Bioengineering
Genetics
Imaging
Shape
Covariance matrices
Correlation
Alzheimer's disease
imaging genetics
subcortical shape
brain imaging
genome-wide association study
Language
ISSN
1945-8452
Abstract
Optimal representations of the genetic structure underlying complex neuroimaging phenotypes lie at the heart of our quest to discover the genetic code of the brain. Here, we suggest a strategy for achieving such a representation by decomposing the genetic covariance matrix of complex phenotypes into maximally heritable and genetically independent components. We show that such a representation can be approximated well with eigenvectors of the genetic covariance based on a large family study. Using 520 twin pairs from the QTIM dataset, we estimate 500 principal genetic components of 54,000 vertex-wise shape features representing fourteen subcortical regions. We show that our features maintain their desired properties in practice. Further, the genetic components are found to be significantly associated with the CLU and PICALM genes in an unrelated Alzheimer's Disease (AD) dataset. The same genes are not significantly associated with other volume and shape measures in this dataset.