학술논문

Automated Brain Tumor Segmentation Based on Multi-Planar Superpixel Level Features Extracted From 3D MR Images
Document Type
Periodical
Source
IEEE Access Access, IEEE. 8:25335-25349 2020
Subject
Aerospace
Bioengineering
Communication, Networking and Broadcast Technologies
Components, Circuits, Devices and Systems
Computing and Processing
Engineered Materials, Dielectrics and Plasmas
Engineering Profession
Fields, Waves and Electromagnetics
General Topics for Engineers
Geoscience
Nuclear Engineering
Photonics and Electrooptics
Power, Energy and Industry Applications
Robotics and Control Systems
Signal Processing and Analysis
Transportation
Feature extraction
Tumors
Magnetic resonance imaging
Image segmentation
Histograms
Three-dimensional displays
Measurement
superpixels
extremely randomized trees
pixel labelling
feature selection
dice score
Language
ISSN
2169-3536
Abstract
Brain tumor segmentation from Magnetic Resonance Imaging (MRI) is of great importance for better tumor diagnosis, growth rate prediction and radiotherapy planning. But this task is extremely challenging due to intrinsically heterogeneous tumor appearance, the presence of severe partial volume effect and ambiguous tumor boundaries. In this work, a unique approach of tumor segmentation is introduced based on superpixel level features extracted from all three planes ( ${x}$ - ${y}$ , ${y}$ - ${z}$ , and ${z}$ - ${x}$ ) of 3D volumetric MR images. In order to avoid the pixel randomness and to account for precise inhomogeneous boundaries of brain tumor, each of the images belonging to a particular plane is partitioned into irregular patches (superpixels) based on their intensity and spatial similarity. Next, various statistical and textural features are extracted from each superpixel where all three planes are considered separately in order to obtain better labeling on superpixels in tumor edges. A feature selection scheme is proposed based on their performance on histogram based consistency analysis and local descriptor pattern analysis, which offers a significant reduction in feature dimension without sacrificing classification performance. For the purpose of supervised classification, Extremely Randomized Trees is used to classify these superpixels into a tumor or a non-tumor class. Finally, pixel level decision is taken based on corresponding decisions obtained in each plane. Extensive simulations are carried out on publicly available dataset and it is found that the proposed method offers better tumor segmentation performance in comparison to that obtained by some state of the art methods.