학술논문

Deep Learning for Drug Discovery and Cancer Research: Automated Analysis of Vascularization Images
Document Type
Periodical
Source
IEEE/ACM Transactions on Computational Biology and Bioinformatics IEEE/ACM Trans. Comput. Biol. and Bioinf. Computational Biology and Bioinformatics, IEEE/ACM Transactions on. 16(3):1029-1035 Jun, 2019
Subject
Bioengineering
Computing and Processing
Drugs
Compounds
Training
In vitro
In vivo
Machine learning
Biological system modeling
computer vision
Language
ISSN
1545-5963
1557-9964
2374-0043
Abstract
Likely drug candidates which are identified in traditional pre-clinical drug screens often fail in patient trials, increasing the societal burden of drug discovery. A major contributing factor to this phenomenon is the failure of traditional in vitro models of drug response to accurately mimic many of the more complex properties of human biology. We have recently introduced a new microphysiological system for growing vascularized, perfused microtissues that more accurately models human physiology and is suitable for large drug screens. In this work, we develop a machine learning model that can quickly and accurately flag compounds which effectively disrupt vascular networks from images taken before and after drug application in vitro. The system is based on a convolutional neural network and achieves near perfect accuracy while committing potentially no expensive false negatives.