학술논문

Automatic segmentation of focal adhesions from mouse embryonic fibroblasts
Document Type
Conference
Source
2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI) Biomedical Imaging (ISBI), 2015 IEEE 12th International Symposium on. :548-551 Apr, 2015
Subject
Bioengineering
Adhesives
Shape
Mice
Fibroblasts
Image edge detection
Recruitment
Algorithm design and analysis
cell segmentation
mouse embryonic fibroblasts
MEF
focal adhesions
Language
ISSN
1945-7928
1945-8452
Abstract
This work describes an automatic algorithm for the segmentation and quantification of focal adhesions from mouse embryonic fibroblasts. The main challenges solved by this algorithm are: the variability of the intensity of the focal adhesions, the detection of an outer ring, which distinguishes the cell periphery responsible for the cell migration, and the quantification of the characteristics of the focal adhesions. The algorithm detects maximal regions through gradients and uses a region-growing algorithm limited by intensity-based edges. The outer ring is calculated based on the average radial intensity from an extended centroid of the cell. Finally, traditional morphological characteristics are obtained to distinguish between two groups of cells. Two of the measurements employed showed statistical difference between two groups of cells.