학술논문

NeSVoR: Implicit Neural Representation for Slice-to-Volume Reconstruction in MRI
Document Type
Periodical
Source
IEEE Transactions on Medical Imaging IEEE Trans. Med. Imaging Medical Imaging, IEEE Transactions on. 42(6):1707-1719 Jun, 2023
Subject
Bioengineering
Computing and Processing
Image reconstruction
Three-dimensional displays
Solid modeling
Magnetic resonance imaging
Encoding
Training
Biomedical imaging
MRI
slice-to-volume reconstruction
motion correction
super-resolution
3D reconstruction
implicit neural representation
fetal brain MRI
Language
ISSN
0278-0062
1558-254X
Abstract
Reconstructing 3D MR volumes from multiple motion-corrupted stacks of 2D slices has shown promise in imaging of moving subjects, e. g., fetal MRI. However, existing slice-to-volume reconstruction methods are time-consuming, especially when a high-resolution volume is desired. Moreover, they are still vulnerable to severe subject motion and when image artifacts are present in acquired slices. In this work, we present NeSVoR, a resolution-agnostic slice-to-volume reconstruction method, which models the underlying volume as a continuous function of spatial coordinates with implicit neural representation. To improve robustness to subject motion and other image artifacts, we adopt a continuous and comprehensive slice acquisition model that takes into account rigid inter-slice motion, point spread function, and bias fields. NeSVoR also estimates pixel-wise and slice-wise variances of image noise and enables removal of outliers during reconstruction and visualization of uncertainty. Extensive experiments are performed on both simulated and in vivo data to evaluate the proposed method. Results show that NeSVoR achieves state-of-the-art reconstruction quality while providing two to ten-fold acceleration in reconstruction times over the state-of-the-art algorithms.