학술논문

Efficient Data Management in Neutron Scattering Data Reduction Workflows at ORNL
Document Type
Conference
Source
2020 IEEE International Conference on Big Data (Big Data) Big Data (Big Data), 2020 IEEE International Conference on. :2674-2680 Dec, 2020
Subject
Communication, Networking and Broadcast Technologies
Computing and Processing
Engineering Profession
Geoscience
Signal Processing and Analysis
Neutron spin echo
Runtime
Data analysis
Instruments
Neutrons
Metadata
Distance measurement
experimental data
reduction workflows
data management
metadata
indexing
Mantid
NeXus
HDF5
neutron scattering
Language
Abstract
Oak Ridge National Laboratory (ORNL) experimental neutron science facilities produce 1.2 TB a day of raw event-based data that is stored using the standard metadata-rich NeXus schema built on top of the HDF5 file format. Performance of several data reduction workflows is largely determined by the amount of time spent on the loading and processing algorithms in Mantid, an open-source data analysis framework used across several neutron sciences facilities around the world. The present work introduces new data management algorithms to address identified input output (I/O) bottlenecks on Mantid. First, we introduce an in-memory binary-tree metadata index that resemble NeXus data access patterns to provide a scalable search and extraction mechanism. Second, data encapsulation in Mantid algorithms is optimally redesigned to reduce the total compute and memory runtime footprint associated with metadata I/O reconstruction tasks. Results from this work show speed ups in wall-clock time on ORNL data reduction workflows, ranging from 11% to 30% depending on the complexity of the targeted instrument-specific data. Nevertheless, we highlight the need for more research to address reduction challenges as experimental data volumes increase.