학술논문

Development of a Rule Based Prognostic Tool for HER 2 Positive Breast Cancer Patients
Document Type
Conference
Source
2007 29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society Engineering in Medicine and Biology Society, 2007. EMBS 2007. 29th Annual International Conference of the IEEE. :5416-5419 Aug, 2007
Subject
Bioengineering
Breast cancer
Decision trees
Input variables
Neural networks
Data mining
Etching
Smoothing methods
Inspection
Production
Bayesian methods
Language
ISSN
1094-687X
1558-4615
Abstract
A three stage development process for the production of a hierarchical rule based prognosis tool is described. The application for this tool is specific to breast cancer patients that have a positive expression of the HER 2 gene. The first stage is the development of a Bayesian classification neural network to classify for cancer specific mortality. Secondly, low-order Boolean rules are extracted form this model using an Orthogonal Search based Rule Extraction (OSRE) algorithm. Further to these rules additional information is gathered from the Kaplan-Meier survival estimates of the population, stratified by the categorizations of the input variables. Finally, expert knowledge is used to further simplify the rules and to rank them hierarchically in the form of a decision tree. The resulting decision tree groups all observations into specific categories by clinical profile and by event rate. The practical clinical value of this decision support tool will in future be tested by external validation with additional data from other clinical centres.