학술논문

A Spatially Constrained Deep Convolutional Neural Network for Nerve Fiber Segmentation in Corneal Confocal Microscopic Images Using Inaccurate Annotations
Document Type
Conference
Source
2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI) Biomedical Imaging (ISBI), 2020 IEEE 17th International Symposium on. :456-460 Apr, 2020
Subject
Bioengineering
Computing and Processing
Photonics and Electrooptics
Signal Processing and Analysis
Image segmentation
Training
Mathematical model
Biomedical imaging
Microscopy
Entropy
Encoding
Medical image segmentation
convolutional neural network
conditional random field
Language
ISSN
1945-8452
Abstract
Semantic image segmentation is one of the most important tasks in medical image analysis. Most state-of-the-art deep learning methods require a large number of accurately annotated examples for model training. However, accurate annotation is difficult to obtain especially in medical applications. In this paper, we propose a spatially constrained deep convolutional neural network (DCNN) to achieve smooth and robust image segmentation using inaccurately annotated labels for training. In our proposed method, image segmentation is formulated as a graph optimization problem that is solved by a DCNN model learning process. The cost function to be optimized consists of a unary term that is calculated by cross entropy measurement and a pairwise term that is based on enforcing a local label consistency. The proposed method has been evaluated based on corneal confocal microscopic (CCM) images for nerve fiber segmentation, where accurate annotations are extremely difficult to be obtained. Based on both the quantitative result of a synthetic dataset and qualitative assessment of a real dataset, the proposed method has achieved superior performance in producing high quality segmentation results even with inaccurate labels for training.