학술논문

Automatic Identification of Single Bacterial Colonies Using Deep and Transfer Learning
Document Type
Periodical
Source
IEEE Access Access, IEEE. 10:120181-120190 2022
Subject
Aerospace
Bioengineering
Communication, Networking and Broadcast Technologies
Components, Circuits, Devices and Systems
Computing and Processing
Engineered Materials, Dielectrics and Plasmas
Engineering Profession
Fields, Waves and Electromagnetics
General Topics for Engineers
Geoscience
Nuclear Engineering
Photonics and Electrooptics
Power, Energy and Industry Applications
Robotics and Control Systems
Signal Processing and Analysis
Transportation
Microorganisms
Transfer learning
COVID-19
Pulmonary diseases
X-ray imaging
Biomedical imaging
Deep learning
Convolutional neural networks
deep convolutional neural network
ResNet
VGG-16
AlexNet
DenseNet
SqueezeNet
dataset
bacterial classification
bacterial colonies
bacteriology
Language
ISSN
2169-3536
Abstract
Bacterial classification is a vital step in medical diagnosis. This procedure normally has several stages. An early stage involves inspecting the morphology of the bacterial colonies. Traditionally, a bacterial colony expert inspects the sample to determine the type of bacteria through visual inspection or molecular biology techniques. With advances in image processing, specifically, the use of deep and transfer learning techniques, and the wide availability of cameras, we applied deep and transfer learning techniques to address this task without requiring expert knowledge or sample shipping. We used a convolutional neural network (CNN) to identify different bacterial colonies based on their appearance in images captured by cell phone cameras. In this paper, we collected a dataset that contains images of different bacteria taken by cell phone cameras with various settings. Thus, images of two classes of bacterial colonies were obtained in King Abdulaziz City for Science and Technology. The dataset contains 8,043 images. The experimental results show that our application has high accuracy without requiring expert inspections.