학술논문

Designing Molecular Circuits for Approximate Maximum a Posteriori Demodulation of Concentration Modulated Signals
Document Type
Periodical
Author
Source
IEEE Transactions on Communications IEEE Trans. Commun. Communications, IEEE Transactions on. 67(8):5458-5473 Aug, 2019
Subject
Communication, Networking and Broadcast Technologies
Demodulation
Chemicals
Molecular communication (telecommunication)
Receivers
Mathematical model
History
Integrated circuit modeling
Molecular communications
maximum a posteriori
molecular circuits
demodulation
molecular computation
analog computation
Language
ISSN
0090-6778
1558-0857
Abstract
Motivated by the fact that living cells use molecular circuits (i.e., a set of chemical reactions) for information processing, this paper investigates the problem of designing molecular circuits for demodulation. In our earlier work, we use a Markovian approach to derive a demodulator for diffusion-based molecular communication. The demodulation filters take the form of an ordinary differential equation, which computes the log-posteriori probability of a transmission symbol being sent. This paper considers the realization of these demodulation filters using molecular circuits assuming the transmission symbols are rectangular pulses of the same duration but different amplitudes, i.e., concentration modulation. This paper makes a number of contributions. First, we use time-scale separation and renewal theory to analytically derive an approximation of the demodulation filter from our earlier work. Second, we present a method to turn this approximation into a molecular circuit. By using simulations, we show that the output of the derived molecular circuit is approximately equal to the log-posteriori probability calculated by the exact demodulation filter if the log-posteriori probability is positive. Third, we demonstrate that a biochemical circuit in yeast behaves similarly to the derived molecular demodulation filter and is therefore a candidate for implementing the derived filter.