학술논문

Reproducible Cross-border High Performance Computing for Scientific Portals
Document Type
Conference
Source
2022 IEEE 18th International Conference on e-Science (e-Science) ESCIENCE e-Science (e-Science), 2022 IEEE 18th International Conference on. :487-492 Oct, 2022
Subject
Communication, Networking and Broadcast Technologies
Computing and Processing
Automation
High performance computing
Clouds
Packaging
Reproducibility of results
Software
Sustainable development
Reproducibility
Cross-border computing
Workflows
Scientific portals
PlutoF
Galaxy
HPC
Containers
Language
Abstract
To reproduce eScience, several challenges need to be solved: scientific workflows need to be automated; the involved software versions need to be provided in an unambiguous way; input data needs to be easily accessible; High-Performance Computing (HPC) clusters are often involved and to achieve bit-to-bit reproducibility, it might be even necessary to execute the code on a particular cluster to avoid differences caused by different HPC platforms (and unless this is a scientist's local cluster, it needs to be accessed across (administrative) borders). Preferably, to allow even inexperienced users to (re-)produce results, all should be user-friendly. While some easy-to-use web-based scientific portals support already to access HPC resources, this typically only refers to computing and data resources that are local. By the example of two community-specific portals in the fields of biodiversity and climate research, we present a solution for accessing remote HPC (and cloud) compute and data resources from scientific portals across borders, involving rigorous container-based packaging of the software version and setup automation, thus enhancing reproducibility.