학술논문

A comparative genomics study of the microbiome and freshwater resistome in Southern Pantanal
Document Type
article
Source
Frontiers in Genetics, Vol 15 (2024)
Subject
resistome
metagenomics
microbiome
pantanal
freshwater
Genetics
QH426-470
Language
English
ISSN
1664-8021
Abstract
This study explores the resistome and bacterial diversity of two small lakes in the Southern Pantanal, one in Aquidauana sub-region, close to a farm, and one in Abobral sub-region, an environmentally preserved area. Shotgun metagenomic sequencing data from water column samples collected near and far from the floating macrophyte Eichhornia crassipes were used. The Abobral small lake exhibited the highest diversity and abundance of antibiotic resistance genes (ARGs), antibiotic resistance classes (ARGCs), phylum, and genus. RPOB2 and its resistance class, multidrug resistance, were the most abundant ARG and ARGC, respectively. Pseudomonadota was the dominant phylum across all sites, and Streptomyces was the most abundant genus considering all sites.