학술논문

mi-Mic: a novel multi-layer statistical test for microbiota-disease associations
Document Type
article
Source
Genome Biology, Vol 25, Iss 1, Pp 1-27 (2024)
Subject
Cladogram
Nested ANOVA
Image-microbiome
16S
WGS
Microbiota
Biology (General)
QH301-705.5
Genetics
QH426-470
Language
English
ISSN
1474-760X
Abstract
Abstract mi-Mic, a novel approach for microbiome differential abundance analysis, tackles the key challenges of such statistical tests: a large number of tests, sparsity, varying abundance scales, and taxonomic relationships. mi-Mic first converts microbial counts to a cladogram of means. It then applies a priori tests on the upper levels of the cladogram to detect overall relationships. Finally, it performs a Mann-Whitney test on paths that are consistently significant along the cladogram or on the leaves. mi-Mic has much higher true to false positives ratios than existing tests, as measured by a new real-to-shuffle positive score.