학술논문

Performing Sparse Regularization and Dimension Reduction Simultaneously in Multimodal Data Fusion
Document Type
article
Author
Zhengshi YangXiaowei ZhuangChristopher BirdKarthik SreenivasanVirendra MishraSarah BanksDietmar Cordesthe Alzheimer's Disease Neuroimaging InitiativeMichael W. WeinerPaul AisenMichael WeinerRonald PetersenClifford R. JackWilliam JagustJohn Q. TrojanowkiArthur W. TogaLaurel BeckettRobert C. GreenAndrew J. SaykinJohn MorrisLeslie M. ShawZaven KhachaturianGreg SorensenMaria CarrilloLew KullerMarc RaichleSteven PaulPeter DaviesHoward FillitFranz HeftiDavid HoltzmanM. Marcel MesulamWilliam PotterPeter SnyderAdam SchwartzTom MontineRonald G. ThomasMichael DonohueSarah WalterDevon GessertTamie SatherGus JiminezArchana B. BalasubramanianJennifer MasonIris SimDanielle HarveyMatthew BernsteinNick FoxPaul ThompsonNorbert SchuffCharles DeCArliBret BorowskiJeff GunterMatt SenjemPrashanthi VemuriDavid JonesKejal KantarciChad WardRobert A. KoeppeNorm FosterEric M. ReimanKewei ChenChet MathisSusan LandauJohn C. MorrisNigel J. CairnsErin FranklinLisa Taylor-ReinwaldVirginia LeeMagdalena KoreckaMichal FigurskiKaren CrawfordScott NeuTatiana M. ForoudSteven PotkinLi ShenKelley FaberSungeun KimKwangsik NhoLean ThalLeon ThalNeil BuckholtzPeter J. SnyderMarilyn AlbertRichard FrankJohn HsiaoJeffrey KayeJoseph QuinnLisa SilbertBetty LindRaina CarterSara DolenLon S. SchneiderSonia PawluczykMauricio BecerraLiberty TeodoroBryan M. SpannJames BrewerHelen VanderswagAdam FleisherJudith L. HeidebrinkJoanne L. LordSara S. MasonColleen S. AlbersDavid KnopmanKris JohnsonRachelle S. DoodyJavier Villanueva-MeyerValory PavlikVictoria ShibleyMunir ChowdhurySusan RountreeMimi DangYaakov SternLawrence S. HonigKaren L. BellBeau AncesMaria CarrollMary L. CreechMark A. MintunStacy SchneiderAngela OliverDaniel MarsonDavid GeldmacherMarissa Natelson LoveRandall GriffithDavid ClarkJohn BrockingtonErik RobersonHillel GrossmanEffie MitsisRaj C. ShahLeyla deToledo-MorrellRanjan DuaraMaria T. Greig-CustoWarren BarkerChiadi OnyikeDaniel D'AgostinoStephanie KielbMartin SadowskiMohammed O. SheikhUlysse AnaztasiaGaikwad MrunaliniP. Murali DoraiswamyJeffrey R. PetrellaSalvador Borges-NetoTerence Z. WongEdward ColemanSteven E. ArnoldJason H. KarlawishDavid A. WolkChristopher M. ClarkCharles D. SmithGreg JichaPeter HardyPartha SinhaElizabeth OatesGary ConradOscar L. LopezMaryAnn OakleyDonna M. SimpsonAnton P. PorsteinssonBonnie S. GoldsteinKim MartinKelly M. MakinoM. Saleem IsmailConnie BrandSteven G. PotkinAdrian PredaDana NguyenKyle WomackDana MathewsMary QuicenoAllan I. LeveyJames J. LahJanet S. CellarJeffrey M. BurnsRussell H. SwerdlowWilliam M. BrooksLiana ApostolovaKathleen TingusEllen WooDaniel H.S. SilvermanPo H. LuGeorge BartzokisNeill R Graff-RadfordFrancine ParfittKim Poki-WalkerMartin R. FarlowAnn Marie HakeBrandy R. MatthewsJared R. BroschScott HerringChristopher H. van DyckRichard E. CarsonMartha G. MacAvoyPradeep VarmaHoward ChertkowHoward BergmanChris HoseinSandra BlackBojana StefanovicCurtis CaldwellGing-Yuek Robin HsiungBenita MudgeVesna SossiHoward FeldmanMichele AssalyElizabeth FingerStephen PasternackIrina RachiskyDick TrostAndrew KerteszCharles BernickDonna MunicMarek-Marsel MesulamEmily RogalskiKristine LipowskiSandra WeintraubBorna BonakdarpourDiana KerwinChuang-Kuo WuNancy JohnsonCarl SadowskyTeresa VillenaRaymond Scott TurnerKathleen JohnsonBrigid ReynoldsReisa A. SperlingKeith A. JohnsonGad MarshallJerome YesavageJoy L. TaylorBarton LaneAllyson RosenJared TinklenbergMarwan N. SabbaghChristine M. BeldenSandra A. JacobsonSherye A. SirrelNeil KowallRonald KillianyAndrew E. BudsonAlexander NorbashPatricia Lynn JohnsonThomas O. ObisesanSaba WoldayJoanne AllardAlan LernerPaula OgrockiCurtis TatsuokaParianne FaticaEvan FletcherPauline MaillardJohn OlichneyCharles DeCarliOwen CarmichaelSmita KitturMichael BorrieT-Y LeeRob BarthaSterling JohnsonSanjay AsthanaCynthia M. CarlssonPierre TariotAnna BurkeAnn Marie MillikenNadira TrncicStephanie ReederVernice BatesHoracio CapoteMichelle RainkaDouglas W. ScharreMaria KatakiBrendan KelleyEarl A. ZimmermanDzintra CelminsAlice D. BrownGodfrey D. PearlsonKaren BlankKaren AndersonLaura A. FlashmanMarc SeltzerMary L. HynesRobert B. SantulliKaycee M. SinkGordineer LeslieJeff D. WilliamsonPradeep GargFranklin WatkinsBrian R. OttGeoffrey TremontLori A. DaielloStephen SallowayPaul MalloyStephen CorreiaHoward J. RosenBruce L. MillerDavid PerryJacobo MintzerKenneth SpicerDavid BachmanStephen PasternakIrina RachinskyJohn RogersDick DrostNunzio PomaraRaymundo HernandoAntero SarraelSusan K. SchultzKaren Ekstam SmithHristina KolevaKi Won NamHyungsub ShimNorman RelkinGloria ChiangMichael LinLisa RavdinAmanda SmithBalebail Ashok RajKristin FargherThomas NeylanJordan GrafmanGessert DevonDavis MelissaRosemary MorrisonHayes JacquelineFinley ShannonKantarci KejalWard ChadErin HouseholderCrawford KarenNeu ScottFriedl KarlBecerra MauricioDebra FleischmanKonstantinos ArfanakisDaniel VaronMaria T GreigOlga JamesBonnie GoldsteinKimberly S. MartinDino MassogliaOlga Brawman-MintzerWalter MartinezHoward RosenKelly BehanSterling C. JohnsonJ. Jay FruehlingSandra HardingElaine R. PeskindEric C. PetrieGail LiJerome A. YesavageAnsgar J. FurstSteven ChaoScott MackinRema RamanErin DrakeMike DonohueGustavo JimenezKelly HarlessJennifer SalazarYuliana CabreraLindsey HergesheimerElizabeth ShafferCraig NelsonDavid BickfordMeryl ButtersMichelle ZmudaDenise ReyesKelley M. FaberKelly N. NudelmanYiu Ho AuKelly SchererDaniel CatalinottoSamuel StarkElise OngDariella Fernandez
Source
Frontiers in Neuroscience, Vol 13 (2019)
Subject
sparse principal component analysis
PCA
canonical correlation analysis
CCA
data fusion
mild cognitive impairment
Neurosciences. Biological psychiatry. Neuropsychiatry
RC321-571
Language
English
ISSN
1662-453X
Abstract
Collecting multiple modalities of neuroimaging data on the same subject is increasingly becoming the norm in clinical practice and research. Fusing multiple modalities to find related patterns is a challenge in neuroimaging analysis. Canonical correlation analysis (CCA) is commonly used as a symmetric data fusion technique to find related patterns among multiple modalities. In CCA-based data fusion, principal component analysis (PCA) is frequently applied as a preprocessing step to reduce data dimension followed by CCA on dimension-reduced data. PCA, however, does not differentiate between informative voxels from non-informative voxels in the dimension reduction step. Sparse PCA (sPCA) extends traditional PCA by adding sparse regularization that assigns zero weights to non-informative voxels. In this study, sPCA is incorporated into CCA-based fusion analysis and applied on neuroimaging data. A cross-validation method is developed and validated to optimize the parameters in sPCA. Different simulations are carried out to evaluate the improvement by introducing sparsity constraint to PCA. Four fusion methods including sPCA+CCA, PCA+CCA, parallel ICA and sparse CCA were applied on structural and functional magnetic resonance imaging data of mild cognitive impairment subjects and normal controls. Our results indicate that sPCA significantly can reduce the impact of non-informative voxels and lead to improved statistical power in uncovering disease-related patterns by a fusion analysis.