학술논문

Independent evolution of multi-dominant viral genome species observed in a hepatitis C virus carrier
Document Type
article
Source
Biochemistry and Biophysics Reports, Vol 32, Iss , Pp 101327- (2022)
Subject
HCV
Quasispecies
Next-generation sequencing
Core 70 polymorphism
Biology (General)
QH301-705.5
Biochemistry
QD415-436
Language
English
ISSN
2405-5808
Abstract
The viral genome quasispecies composition of hepatitis C virus (HCV) could have important implications to viral pathogenesis and resistance to anti-viral treatment. The purpose of the present study was to profile the HCV RNA quasispecies. We developed a strategy to determine the full-length HCV genome sequences co-existing within a single patient serum by using next-generation sequencing technologies. The isolated viral clones were divided into the groups that can be distinguished by core amino acid 70 substitution. Subsequently, we determined HCV full-length genome sequences of three independent dominant species co-existing in the sequential serum with a 7-year interval. From phylogenetic analysis, these dominant species evolved independently. Our study demonstrated that multiple dominant species co-existed in patient sera and evolved independently.