학술논문

Prediction and Classification of Alzheimer’s Disease Based on Combined Features From Apolipoprotein-E Genotype, Cerebrospinal Fluid, MR, and FDG-PET Imaging Biomarkers
Document Type
article
Author
Yubraj GuptaRamesh Kumar LamaGoo-Rak KwonAlzheimer's Disease Neuroimaging InitiativeMichael W. WeinerPaul AisenMichael WeinerRonald PetersenClifford R. JackWilliam JagustJohn Q. TrojanowkiArthur W. TogaLaurel BeckettRobert C. GreenAndrew J. SaykinJohn MorrisLeslie M. ShawZaven KhachaturianGreg SorensenMaria CarrilloLew KullerMarc RaichleSteven PaulPeter DaviesHoward FillitFranz HeftiDavid HoltzmanM. Marcel MesulamWilliam PotterPeter SnyderAdam SchwartzTom MontineRonald G. ThomasMichael DonohueSarah WalterDevon GessertTamie SatherGus JiminezArchana B. BalasubramanianJennifer MasonIris SimDanielle HarveyMatthew BernsteinNick FoxPaul ThompsonNorbert SchuffCharles DeCArliBret BorowskiJeff GunterMatt SenjemPrashanthi VemuriDavid JonesKejal KantarciChad WardRobert A. KoeppeNorm FosterEric M. ReimanKewei ChenChet MathisSusan LandauJohn C. MorrisNigel J. CairnsErin FranklinLisa Taylor-ReinwaldVirginia LeeMagdalena KoreckaMichal FigurskiKaren CrawfordScott NeuTatiana M. ForoudSteven PotkinLi ShenKelley FaberSungeun KimKwangsik NhoLean ThalLeon ThalNeil BuckholtzPeter J. SnyderMarilyn AlbertRichard FrankJohn HsiaoJeffrey KayeJoseph QuinnLisa SilbertBetty LindRaina CarterSara DolenLon S. SchneiderSonia PawluczykMauricio BecerraLiberty TeodoroBryan M. SpannJames BrewerHelen VanderswagAdam FleisherJudith L. HeidebrinkJoanne L. LordSara S. MasonColleen S. AlbersDavid KnopmanKris JohnsonRachelle S. DoodyJavier Villanueva-MeyerValory PavlikVictoria ShibleyMunir ChowdhurySusan RountreeMimi DangYaakov SternLawrence S. HonigKaren L. BellBeau AncesMaria CarrollMary L. CreechMark A. MintunStacy SchneiderAngela OliverDaniel MarsonDavid GeldmacherMarissa Natelson LoveRandall GriffithDavid ClarkJohn BrockingtonErik RobersonHillel GrossmanEffie MitsisRaj C. ShahLeyla deToledo-MorrellRanjan DuaraMaria T. Greig-CustoWarren BarkerChiadi OnyikeDaniel D'AgostinoStephanie KielbMartin SadowskiMohammed O. SheikhUlysse AnaztasiaGaikwad MrunaliniP. Murali DoraiswamyJeffrey R. PetrellaSalvador Borges-NetoTerence Z. WongEdward ColemanSteven E. ArnoldJason H. KarlawishDavid A. WolkChristopher M. ClarkCharles D. SmithGreg JichaPeter HardyPartha SinhaElizabeth OatesGary ConradOscar L. LopezMaryAnn OakleyDonna M. SimpsonAnton P. PorsteinssonBonnie S. GoldsteinKim MartinKelly M. MakinoM. Saleem IsmailConnie BrandSteven G. PotkinAdrian PredaDana NguyenKyle WomackDana MathewsMary QuicenoAllan I. LeveyJames J. LahJanet S. CellarJeffrey M. BurnsRussell H. SwerdlowWilliam M. BrooksLiana ApostolovaKathleen TingusEllen WooDaniel H.S. SilvermanPo H. LuGeorge BartzokisNeill R Graff-RadfordFrancine ParfittKim Poki-WalkerMartin R. FarlowAnn Marie HakeBrandy R. MatthewsJared R. BroschScott HerringChristopher H. van DyckRichard E. CarsonMartha G. MacAvoyPradeep VarmaHoward ChertkowHoward BergmanChris HoseinSandra BlackBojana StefanovicCurtis CaldwellGing-Yuek Robin HsiungBenita MudgeVesna SossiHoward FeldmanMichele AssalyElizabeth FingerStephen PasternackIrina RachiskyDick TrostAndrew KerteszCharles BernickDonna MunicMarek-Marsel MesulamEmily RogalskiKristine LipowskiSandra WeintraubBorna BonakdarpourDiana KerwinChuang-Kuo WuNancy JohnsonCarl SadowskyTeresa VillenaRaymond Scott TurnerKathleen JohnsonBrigid ReynoldsReisa A. SperlingKeith A. JohnsonGad MarshallJerome YesavageJoy L. TaylorBarton LaneAllyson RosenJared TinklenbergMarwan N. SabbaghChristine M. BeldenSandra A. JacobsonSherye A. SirrelNeil KowallRonald KillianyAndrew E. BudsonAlexander NorbashPatricia Lynn JohnsonThomas O. ObisesanSaba WoldayJoanne AllardAlan LernerPaula OgrockiCurtis TatsuokaParianne FaticaEvan FletcherPauline MaillardJohn OlichneyCharles DeCarliOwen CarmichaelSmita KitturMichael BorrieT-Y LeeRob BarthaSterling JohnsonSanjay AsthanaCynthia M. CarlssonPierre TariotAnna BurkeAnn Marie MillikenNadira TrncicStephanie ReederVernice BatesHoracio CapoteMichelle RainkaDouglas W. ScharreMaria KatakiBrendan KelleyEarl A. ZimmermanDzintra CelminsAlice D. BrownGodfrey D. PearlsonKaren BlankKaren AndersonLaura A. FlashmanMarc SeltzerMary L. HynesRobert B. SantulliKaycee M. SinkGordineer LeslieJeff D. WilliamsonPradeep GargFranklin WatkinsBrian R. OttGeoffrey TremontLori A. DaielloStephen SallowayPaul MalloyStephen CorreiaHoward J. RosenBruce L. MillerDavid PerryJacobo MintzerKenneth SpicerDavid BachmanStephen PasternakIrina RachinskyJohn RogersDick DrostNunzio PomaraRaymundo HernandoAntero SarraelSusan K. SchultzKaren Ekstam SmithHristina KolevaKi Won NamHyungsub ShimNorman RelkinGloria ChiangMichael LinLisa RavdinAmanda SmithBalebail Ashok RajKristin FargherThomas NeylanJordan GrafmanGessert DevonDavis MelissaRosemary MorrisonHayes JacquelineFinley ShannonKantarci KejalWard ChadErin HouseholderCrawford KarenNeu ScottFriedl KarlBecerra MauricioDebra FleischmanKonstantinos ArfanakisDaniel VaronMaria T GreigOlga JamesBonnie GoldsteinKimberly S. MartinDino MassogliaOlga Brawman-MintzerWalter MartinezHoward RosenKelly BehanSterling C. JohnsonJ. Jay FruehlingSandra HardingElaine R. PeskindEric C. PetrieGail LiJerome A. YesavageAnsgar J. FurstSteven ChaoScott MackinRema RamanErin DrakeMike DonohueGustavo JimenezKelly HarlessJennifer SalazarYuliana CabreraLindsey HergesheimerElizabeth ShafferCraig NelsonDavid BickfordMeryl ButtersMichelle ZmudaDenise ReyesKelley M. FaberKelly N. NudelmanYiu Ho AuKelly SchererDaniel CatalinottoSamuel StarkElise OngDariella Fernandez
Source
Frontiers in Computational Neuroscience, Vol 13 (2019)
Subject
Alzheimer's disease
MCIs (MCI stable)
MCIc (MCI converted)
sMRI
FDG-PET
CSF
Neurosciences. Biological psychiatry. Neuropsychiatry
RC321-571
Language
English
ISSN
1662-5188
Abstract
Alzheimer's disease (AD), including its mild cognitive impairment (MCI) phase that may or may not progress into the AD, is the most ordinary form of dementia. It is extremely important to correctly identify patients during the MCI stage because this is the phase where AD may or may not develop. Thus, it is crucial to predict outcomes during this phase. Thus far, many researchers have worked on only using a single modality of a biomarker for the diagnosis of AD or MCI. Although recent studies show that a combination of one or more different biomarkers may provide complementary information for the diagnosis, it also increases the classification accuracy distinguishing between different groups. In this paper, we propose a novel machine learning-based framework to discriminate subjects with AD or MCI utilizing a combination of four different biomarkers: fluorodeoxyglucose positron emission tomography (FDG-PET), structural magnetic resonance imaging (sMRI), cerebrospinal fluid (CSF) protein levels, and Apolipoprotein-E (APOE) genotype. The Alzheimer's Disease Neuroimaging Initiative (ADNI) baseline dataset was used in this study. In total, there were 158 subjects for whom all four modalities of biomarker were available. Of the 158 subjects, 38 subjects were in the AD group, 82 subjects were in MCI groups (including 46 in MCIc [MCI converted; conversion to AD within 24 months of time period], and 36 in MCIs [MCI stable; no conversion to AD within 24 months of time period]), and the remaining 38 subjects were in the healthy control (HC) group. For each image, we extracted 246 regions of interest (as features) using the Brainnetome template image and NiftyReg toolbox, and later we combined these features with three CSF and two APOE genotype features obtained from the ADNI website for each subject using early fusion technique. Here, a different kernel-based multiclass support vector machine (SVM) classifier with a grid-search method was applied. Before passing the obtained features to the classifier, we have used truncated singular value decomposition (Truncated SVD) dimensionality reduction technique to reduce high dimensional features into a lower-dimensional feature. As a result, our combined method achieved an area under the receiver operating characteristic (AU-ROC) curve of 98.33, 93.59, 96.83, 94.64, 96.43, and 95.24% for AD vs. HC, MCIs vs. MCIc, AD vs. MCIs, AD vs. MCIc, HC vs. MCIc, and HC vs. MCIs subjects which are high relative to single modality results and other state-of-the-art approaches. Moreover, combined multimodal methods have improved the classification performance over the unimodal classification.