학술논문

Hi-C as a tool for precise detection and characterisation of chromosomal rearrangements and copy number variation in human tumours
Document Type
article
Source
Genome Biology, Vol 18, Iss 1, Pp 1-11 (2017)
Subject
Hi-C
Chromosome conformation capture
Cancer
Tumour
Glioblastoma
Anaplastic astrocytoma
Biology (General)
QH301-705.5
Genetics
QH426-470
Language
English
ISSN
1474-760X
Abstract
Abstract Chromosomal rearrangements occur constitutionally in the general population and somatically in the majority of cancers. Detection of balanced rearrangements, such as reciprocal translocations and inversions, is troublesome, which is particularly detrimental in oncology where rearrangements play diagnostic and prognostic roles. Here we describe the use of Hi-C as a tool for detection of both balanced and unbalanced chromosomal rearrangements in primary human tumour samples, with the potential to define chromosome breakpoints to bp resolution. In addition, we show copy number profiles can also be obtained from the same data, all at a significantly lower cost than standard sequencing approaches.