학술논문

A Parallel Architecture for the Partitioning around Medoids (PAM) Algorithm for Scalable Multi-Core Processor Implementation with Applications in Healthcare
Document Type
article
Source
Sensors, Vol 18, Iss 12, p 4129 (2018)
Subject
clustering
partitioning around medoids
scalable
parallel
reconfigurable
FPGA
MPSoCs
multi-core processor
time complexity
speedup
Chemical technology
TP1-1185
Language
English
ISSN
1424-8220
Abstract
Clustering is the most common method for organizing unlabeled data into its natural groups (called clusters), based on similarity (in some sense or another) among data objects. The Partitioning Around Medoids (PAM) algorithm belongs to the partitioning-based methods of clustering widely used for objects categorization, image analysis, bioinformatics and data compression, but due to its high time complexity, the PAM algorithm cannot be used with large datasets or in any embedded or real-time application. In this work, we propose a simple and scalable parallel architecture for the PAM algorithm to reduce its running time. This architecture can easily be implemented either on a multi-core processor system to deal with big data or on a reconfigurable hardware platform, such as FPGA and MPSoCs, which makes it suitable for real-time clustering applications. Our proposed model partitions data equally among multiple processing cores. Each core executes the same sequence of tasks simultaneously on its respective data subset and shares intermediate results with other cores to produce results. Experiments show that the computational complexity of the PAM algorithm is reduced exponentially as we increase the number of cores working in parallel. It is also observed that the speedup graph of our proposed model becomes more linear with the increase in number of data points and as the clusters become more uniform. The results also demonstrate that the proposed architecture produces the same results as the actual PAM algorithm, but with reduced computational complexity.