학술논문

Identifying and Counting Avian Blood Cells in Whole Slide Images via Deep Learning
Document Type
article
Source
Birds, Vol 5, Iss 1, Pp 48-66 (2024)
Subject
cell segmentation
bird blood analysis
microscopy images
blood smear images
object detection
ornithology
Ecology
QH540-549.5
Animal culture
SF1-1100
Language
English
ISSN
2673-6004
Abstract
Avian blood analysis is a fundamental method for investigating a wide range of topics concerning individual birds and populations of birds. Determining precise blood cell counts helps researchers gain insights into the health condition of birds. For example, the ratio of heterophils to lymphocytes (H/L ratio) is a well-established index for comparing relative stress load. However, such measurements are currently often obtained manually by human experts. In this article, we present a novel approach to automatically quantify avian red and white blood cells in whole slide images. Our approach is based on two deep neural network models. The first model determines image regions that are suitable for counting blood cells, and the second model is an instance segmentation model that detects the cells in the determined image regions. The region selection model achieves up to 97.3% in terms of F1 score (i.e., the harmonic mean of precision and recall), and the instance segmentation model achieves up to 90.7% in terms of mean average precision. Our approach helps ornithologists acquire hematological data from avian blood smears more precisely and efficiently.