학술논문

TaxMan: an online facility for the coding of continuous characters for cladistic analysis
Document Type
Working Paper
Source
Subject
Statistics - Applications
Quantitative Biology - Populations and Evolution
Language
Abstract
A consensus is emerging that continuous (or metric) measures can be useful in phylogenetic systematics. Many of the methods for coding such characters, how- ever, employ elements that are arbitrary and therefore should be excluded from use in cladistic analysis. The continued use of such potentially inappropriate methods can be attributed to either their simplicity or the availability of computer programs specifically designed to produce data matrices using these methods. Conversely, one of the most suitable methods, homogeneous subset coding (HSC), is underused, probably due to the lack of a suitable software implementation for this somewhat complex procedure. This paper describes TaxMan, a Web-based facility for the coding of continuous data using HSC. Data are entered using a form accessible via any internet browser and are automatically converted to a matrix suitable for input into tree-searching software. This implementation of the HSC technique provides an uncomplicated procedure for the incorporation of metric data in phylogenetic systematics. The algorithmic implementation of the HSC procedure, and interpolation of the Studentised range and maximum modulus distributions required by it, is described in detail in appendices.
Comment: Unpublished manuscript from 2008/2009, provided for reference and link to implementation of (now superseded) statistical procedure