학술논문
False Discovery Proportion control for aggregated Knockoffs
Document Type
Working Paper
Source
Subject
Language
Abstract
Controlled variable selection is an important analytical step in various scientific fields, such as brain imaging or genomics. In these high-dimensional data settings, considering too many variables leads to poor models and high costs, hence the need for statistical guarantees on false positives. Knockoffs are a popular statistical tool for conditional variable selection in high dimension. However, they control for the expected proportion of false discoveries (FDR) and not their actual proportion (FDP). We present a new method, KOPI, that controls the proportion of false discoveries for Knockoff-based inference. The proposed method also relies on a new type of aggregation to address the undesirable randomness associated with classical Knockoff inference. We demonstrate FDP control and substantial power gains over existing Knockoff-based methods in various simulation settings and achieve good sensitivity/specificity tradeoffs on brain imaging and genomic data.
Comment: NeurIPS 2023
Comment: NeurIPS 2023