학술논문

MetaCompass: Reference-guided Assembly of Metagenomes
Document Type
Working Paper
Source
Subject
Quantitative Biology - Genomics
Quantitative Biology - Quantitative Methods
Language
Abstract
Metagenomic studies have primarily relied on de novo assembly for reconstructing genes and genomes from microbial mixtures. While reference-guided approaches have been employed in the assembly of single organisms, they have not been used in a metagenomic context. Here we describe the first effective approach for reference-guided metagenomic assembly that can complement and improve upon de novo metagenomic assembly methods for certain organisms. Such approaches will be increasingly useful as more genomes are sequenced and made publicly available.
Comment: 18 pages, 6 figures, 3 tables, one supplementary material