학술논문

Controlling bias and inflation in epigenome- and transcriptome-wide association studies using the empirical null distribution
Document Type
Article
Source
Genome Biology; December 2017, Vol. 18 Issue: 1 p1-13, 13p
Subject
Language
ISSN
14747596; 1474760X
Abstract
We show that epigenome- and transcriptome-wide association studies (EWAS and TWAS) are prone to significant inflation and bias of test statistics, an unrecognized phenomenon introducing spurious findings if left unaddressed. Neither GWAS-based methodology nor state-of-the-art confounder adjustment methods completely remove bias and inflation. We propose a Bayesian method to control bias and inflation in EWAS and TWAS based on estimation of the empirical null distribution. Using simulations and real data, we demonstrate that our method maximizes power while properly controlling the false positive rate. We illustrate the utility of our method in large-scale EWAS and TWAS meta-analyses of age and smoking.