학술논문
Harmonizing the Generation and Pre-publication Stewardship of FAIR Image data.
Document Type
Author
Bialy N; Morgridge Institute for Research, Madison, USA.; Alber F; University of California Los Angeles, USA.; Andrews B; University of Toronto, Toronto Canada.; Angelo M; Stanford University, Palo Alto, USA.; Beliveau B; University of Washington, Seattle, USA.; Bintu L; Stanford University, Palo Alto, USA.; Boettiger A; Stanford University, Palo Alto, USA.; Boehm U; Carl Zeiss AG, Oberkochen, Germany.; Brown CM; McGill University, Montreal, Canada.; Maina MB; University of Sussex, Sussex, UK and Yobe State University, Nigeria.; Chambers JJ; University of Massachusetts, Amherst, USA.; Cimini BA; Broad Institute of MIT and Harvard, Imaging Platform, Cambridge, USA.; Eliceiri K; Morgridge Institute for Research, Madison, USA.; University of Wisconsin-Madison, Madison, USA.; Errington R; Cardiff University, Cardiff, UK.; Faklaris O; Univ. Montpellier, CNRS, INSERM, Montpellier, France.; Gaudreault N; Allen Institute for Cell Science, Seattle, USA.; Germain RN; National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, USA.; Goscinski W; National Imaging Facility, Brisbane, Australia.; Grunwald D; UMass Chan Medical School, Worcester, USA.; Halter M; National Institute of Standards and Technology, Gaithersburg, USA.; Hanein D; University of California, Santa Barbara, USA.; Hickey JW; Duke University, Durham, USA.; Lacoste J; MIA Cellavie Inc., Montreal, Canada.; Laude A; Newcastle University, Newcastle upon Tyne, UK.; Lundberg E; Stanford University, Palo Alto, USA.; SciLifeLab, KTH Royal Institute of Technology, Stockholm, Sweden.; Ma J; Carnegie Mellon University, Pittsburgh, USA.; Malacrida L; Institut Pasteur de Montevideo, & Universidad de la República, Montevideo, Uruguay.; Moore J; German BioImaging-Gesellschaft für Mikroskopie und Bildanalyse e.V., Constance, Germany.; Nelson G; Newcastle University, Newcastle upon Tyne, UK.; Neumann EK; University of California, Davis, Davis, USA.; Nitschke R; University of Freiburg, Freiburg, Germany.; Onami S; RIKEN Center for Biosystems Dynamics Research, Kobe, Japan.; Pimentel JA; Universidad Nacional Autónoma de México, Cuernavaca, México.; Plant AL; National Institute of Standards and Technology, Gaithersburg, USA.; Radtke AJ; National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, USA.; Sabata B; Altos Labs, Redwood City, USA.; Schapiro D; Heidelberg University Hospital, Heidelberg, Germany.; Schöneberg J; University of California San Diego, San Diego, USA.; Spraggins JM; Vanderbilt University School of Medicine, Nashville, USA.; Sudar D; Quantitative Imaging Systems LLC, Portland, USA.; Adrien Maria Vierdag WM; European Molecular Biology Laboratorium, Heidelberg, Baden-Württemberg, Germany.; Volkmann N; University of California, Santa Barbara, USA.; Wählby C; Uppsala University, Uppsala, Sweden.; Wang SS; Yale University, New Haven, USA.; Yaniv Z; National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, USA.; Strambio-De-Castillia C; UMass Chan Medical School, Worcester, USA.
Source
Country of Publication: United States NLM ID: 101759493 Publication Model: Electronic Cited Medium: Internet ISSN: 2331-8422 (Electronic) Linking ISSN: 23318422 NLM ISO Abbreviation: ArXiv Subsets: PubMed not MEDLINE
Subject
Language
English
Abstract
Together with the molecular knowledge of genes and proteins, biological images promise to significantly enhance the scientific understanding of complex cellular systems and to advance predictive and personalized therapeutic products for human health. For this potential to be realized, quality-assured image data must be shared among labs at a global scale to be compared, pooled, and reanalyzed, thus unleashing untold potential beyond the original purpose for which the data was generated. There are two broad sets of requirements to enable image data sharing in the life sciences. One set of requirements is articulated in the companion White Paper entitled "Enabling Global Image Data Sharing in the Life Sciences," which is published in parallel and addresses the need to build the cyberinfrastructure for sharing the digital array data (arXiv:2401.13023 [q-bio.OT], https://doi.org/10.48550/arXiv.2401.13023). In this White Paper, we detail a broad set of requirements, which involves collecting, managing, presenting, and propagating contextual information essential to assess the quality, understand the content, interpret the scientific implications, and reuse image data in the context of the experimental details. We start by providing an overview of the main lessons learned to date through international community activities, which have recently made considerable progress toward generating community standard practices for imaging Quality Control (QC) and metadata. We then provide a clear set of recommendations for amplifying this work. The driving goal is to address remaining challenges, and democratize access to common practices and tools for a spectrum of biomedical researchers, regardless of their expertise, access to resources, and geographical location.
Competing Interests: Conflict of Interest Statements Below are the statements shared by contributors indicating potential conflict of interest. NameStatementUlrike BoehmUB’s contribution to this manuscript is a result of her voluntary involvement with QUAREP-LiMi and BINA, and does not reflect the position of Carl Zeiss AG on this matter.Josh Mooreholds equity in Glencoe Software.Denis SchapiroDS reports funding from GSK and received honorariums from Immunai, Alpenglow and Lunaphore.Damir SudarDSu is employed by Quantitative Imaging Systems, a commercial entity developing imaging software.Siyuan (Steven) WangFounder, shareholder, consultant of Translura, Inc
Competing Interests: Conflict of Interest Statements Below are the statements shared by contributors indicating potential conflict of interest. NameStatementUlrike BoehmUB’s contribution to this manuscript is a result of her voluntary involvement with QUAREP-LiMi and BINA, and does not reflect the position of Carl Zeiss AG on this matter.Josh Mooreholds equity in Glencoe Software.Denis SchapiroDS reports funding from GSK and received honorariums from Immunai, Alpenglow and Lunaphore.Damir SudarDSu is employed by Quantitative Imaging Systems, a commercial entity developing imaging software.Siyuan (Steven) WangFounder, shareholder, consultant of Translura, Inc